Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00832 ATGGGCAGGTATTACTACCCTTCTTCATCTTTCCTTAGTGTTGTTTACTTCCTCTTTTCTTTCTCTCCCATGGTCTTCTCCCTGCTATCACAAACCCAAACACAAACCATGAACAGTCTCTCAAAGAATCTTACTGGTAGGACTCCATGGACTGGCTCAGACCCATGTGCATGGAAGGGAGTGAGTTGTGCCAACTCCTCTGTAGTAGGGATTTCTTTATCTGGCTTTTCACTCAATTCTTCTGACTTTCTGCCCCTTGTTTGCAAAATTGAAACTTTAGAGATTCTTGATGTCTCCAATAACCGTCTGACCTCAATCCATGATGGTTTCATCACTGAGTGTGGAAAGATAAAGGGTTTGAAACTGTTGAGTTTCAGTAATAACAATTTAGGTGTTTTACCTACTTTTCATGGCTTTGATGCATTGGAATCCCTGGATATGTCTTTCAATGCGATGAGAGGGAATATTGTTTTAGAGATAGATGGGTTGGTTAGCCTCAAAATTTTGAATCTTAGTTTAAATGTATTCTCTGGGTCTCTTCCTACCAAATTGGGAAGGTCCATGGTTTTGGAGCACCTTCTGCTTTCTAACAATAGTTTTGAAGGCAAAATCCCTGATGAATTATTGAGTTATGAAAACTTGACTTGGATTGATCTTAAGAACAATAGACTTTCACACTCTATTCCTACCAATATCGGGAAGCTTTCTAAATTAGAAACTTTGATCCTTTCCAATAATGACCTCACTGGTGAAATTCCAACTTCACTGGCGAACATCACCAAACTTTCAAGATTTGCAGCAAATCAGAACAACTTCACAGGTTCCATACCTTCTGGGATTACAAAATATCTCACGAGTTTGGATCTTAGTTATAATACTCTGTCTGGCGCCATTCCAGAAGACTTTTTATCTCCACAACAGTTGCAGGTTGTAGATTTGACCAATAATACGTTAAATGGGTCTTTACCTACGAAAGTTTCTCCAAATTTGTTCAGGTTGAGGTTTGGCAGCAATCAGCTGAGTGGAAACATTCCTTCAGATGCTTTTGTAGAAGTTCAGAATTTGACATACTTGGAGCTGGATAACAATATCTTCACGGGATCAATACCACCTAAGTTGGGTTCTTGCAGGGATTTGACATTGTTGAATTTAGCTCGGAATCGGTTGAGTGGTGTATTGCCACGAGAGATTGCCAATCTCACCAATCTCCATGTCTTGCAGCTCCAATTGAACAATCTTAGTGGTTCAATCCCAACTCAAATTGGCCAACTTCATAAGTTGTTAACCCTGAATTTGAGCCGGAATTCTCTGACTGGACCAATTCCATCTGAGATTAGCAGTTTAAGTGGTCTTAATTTCCTGTACTTGCAAGGGAACTATCTTAGTGGTACCATACCAACATCTATTGGCAAGTTTGATCATCTTTTAGAACTCCAACTTGGGGAAAACCACTTGAGCGGTGTGATTCCAAGCATGCCATTGAGTCTGCAGGTTACATTGAATCTTAGTAGCAACCACTTTAATGGTTCTATTCCTAGCAGTTTTGGTACTTTGAGTAGCCTAGAAATCTTGGATCTCTCAAATAACAACTTTTCTGGTAAAATTCCTTATGATCTTACTAACATGCCGGCTTTGACACGGTTGATACTTTCTAACAATCCTCTGTCTGGAGAAATCCCAAAATTCAATCACGATGTTTATGTTGAACATAATGGAACTAACCTAAAAGATAATACTGCACAGGACAACCCAACTATCAAGACAGCAGGGTCCAAGAGTGTAATAAGCGTTGGAGTGGCCATTCTCATTGCAATTGTAGCAGCTATTTTTCTTGTTGGCTTTGTCACTCTATTGATTTTGTCAGTATCACGCCACTATTACAGGGTTAATGATGAGCATTCACAGTCAACAGAAGTTCGTCAGCATCCTCAGGTCATGCAAAGTAATCTGTTAACTCCTAATGGCATACATAGATCAAACATTGACTTCTCCAAAGCCATGGAAGCTGTTGCCGAAACATCAAATGTTACTCTTAAAACAAGGTTTTCAACTTATTACAAGGCTGTCATGCCGTCTGGTTCAATCTATTATGTCAAGAAACTGAACTGGTTTGACAAGGTATTCCAAGGGGGAAGTCATGATAAGTTTGTTAAAGAGCTAGAAGTTTTGGCCAAATTGAACAACTCGAATGTCATGACTCCTTTGGCCTATGTTCTGTCCACTGACACTGCTTATATACTATACGAGTTTATCTCAAATGGCTCCCTCTTTGATGTTCTTCATGGAAGCATGGATTTGACTTTAGATTGGGCTAGCAGATACAGTATAGCTGTTGGAGTGGCTCAAGGACTTTCTTTTCTTCATGGATTCGCCTCTAGTCCAATACTACTCCTTGACCTGTCAAGTAAAAGTATTATGCTGAAGTCCCTCAAGGAGCCTCTAGTTGGGGATATTGAACACTACAAGGTGATTGATCCCTCAAAAAGTACGGGGAACTTTTCTGCAGTTGCTGGTTCAGTTGGTTATATTCCTCCAGAGTATGCATACACAATGACAGTAACAATGGCTGGGAATGTCTACAGCTTTGGTGTGATTCTGCTTGAACTGCTGACAGGAAAGCCTGCAGTGACTGAGGGAACGGAATTGGTGAAGTGGGTTTGGCGTAACTCCACAAACCAAGATTACATTCTTGACTTTAATATCAGTAGAACATCACAAGCAGTCAGAAACCAGATGCTTGCAATTCTTGAGATTGCTCGTGTTTGTGTTGGTACATCCCCAGAATCAAGACCAAAGATGAAGAGTGTACTAAGGATGCTCTTAAATGCTAGATGA 2835 0.4018 MGRYYYPSSSFLSVVYFLFSFSPMVFSLLSQTQTQTMNSLSKNLTGRTPWTGSDPCAWKGVSCANSSVVGISLSGFSLNSSDFLPLVCKIETLEILDVSNNRLTSIHDGFITECGKIKGLKLLSFSNNNLGVLPTFHGFDALESLDMSFNAMRGNIVLEIDGLVSLKILNLSLNVFSGSLPTKLGRSMVLEHLLLSNNSFEGKIPDELLSYENLTWIDLKNNRLSHSIPTNIGKLSKLETLILSNNDLTGEIPTSLANITKLSRFAANQNNFTGSIPSGITKYLTSLDLSYNTLSGAIPEDFLSPQQLQVVDLTNNTLNGSLPTKVSPNLFRLRFGSNQLSGNIPSDAFVEVQNLTYLELDNNIFTGSIPPKLGSCRDLTLLNLARNRLSGVLPREIANLTNLHVLQLQLNNLSGSIPTQIGQLHKLLTLNLSRNSLTGPIPSEISSLSGLNFLYLQGNYLSGTIPTSIGKFDHLLELQLGENHLSGVIPSMPLSLQVTLNLSSNHFNGSIPSSFGTLSSLEILDLSNNNFSGKIPYDLTNMPALTRLILSNNPLSGEIPKFNHDVYVEHNGTNLKDNTAQDNPTIKTAGSKSVISVGVAILIAIVAAIFLVGFVTLLILSVSRHYYRVNDEHSQSTEVRQHPQVMQSNLLTPNGIHRSNIDFSKAMEAVAETSNVTLKTRFSTYYKAVMPSGSIYYVKKLNWFDKVFQGGSHDKFVKELEVLAKLNNSNVMTPLAYVLSTDTAYILYEFISNGSLFDVLHGSMDLTLDWASRYSIAVGVAQGLSFLHGFASSPILLLDLSSKSIMLKSLKEPLVGDIEHYKVIDPSKSTGNFSAVAGSVGYIPPEYAYTMTVTMAGNVYSFGVILLELLTGKPAVTEGTELVKWVWRNSTNQDYILDFNISRTSQAVRNQMLAILEIARVCVGTSPESRPKMKSVLRMLLNAR 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00832 944 Gene3D Transferase(Phosphotransferase) domain 1 751 944 - -
Vian8g00832 944 PRINTS Leucine-rich repeat signature 518 531 - -
Vian8g00832 944 PRINTS Leucine-rich repeat signature 284 297 - -
Vian8g00832 944 FunFam leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 751 944 - -
Vian8g00832 944 PANTHER OS05G0588300 PROTEIN 189 302 - -
Vian8g00832 944 Pfam Leucine rich repeat 401 461 IPR001611 GO:0005515
Vian8g00832 944 Pfam Leucine rich repeat 499 555 IPR001611 GO:0005515
Vian8g00832 944 Pfam Leucine rich repeat 92 151 IPR001611 GO:0005515
Vian8g00832 944 Gene3D Ribonuclease Inhibitor 283 581 IPR032675 -
Vian8g00832 944 Gene3D Ribonuclease Inhibitor 28 185 IPR032675 -
Vian8g00832 944 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 303 587 - -
Vian8g00832 944 Gene3D Ribonuclease Inhibitor 186 282 IPR032675 -
Vian8g00832 944 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 639 750 - -
Vian8g00832 944 Pfam Protein kinase domain 682 938 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00832 944 SUPERFAMILY Protein kinase-like (PK-like) 682 940 IPR011009 -
Vian8g00832 944 SUPERFAMILY L domain-like 47 323 - -
Vian8g00832 944 Gene3D Phosphorylase Kinase; domain 1 633 750 - -
Vian8g00832 944 FunFam Leucine-rich repeat receptor protein kinase EMS1 204 300 - -
Vian8g00832 944 SUPERFAMILY RNI-like 252 560 - -
Vian8g00832 944 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 31 183 - -
Vian8g00832 944 ProSiteProfiles Protein kinase domain profile. 671 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00832 944 SMART LRR_typ_2 448 472 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 352 376 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 235 258 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 163 187 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 117 138 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 400 424 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 518 542 IPR003591 -
Vian8g00832 944 SMART LRR_typ_2 90 113 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00832 Vian-Chr8 18580846 18584345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00832 142 944 Receptor kinase-like Gene Family AT2G41820 38.249 1.32e-153 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vian8g00832 Pkinase 8.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00832 - - gmx:100796647 1325.84