Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00828 ATGGATACAAATGGGAGTCTACGTGCCAACAACTGGGCAAGGTCTTCATCGTTAACCTCGGATTCCATGTCATTCCCAAATTTTGGTCTGCAGAATAATCAACCGAAATGGGATGATCCTTCAAATTCTGATTATGGGATCAGAGCAGAAGTACCTTTCAAAGACTTCAACCAGCCTTCTCAAACTCAGTCTCCACTTCCTTGCAACTCAAACAACGAGATTGAGATCCCAAATCAAGAAAACTGTCATCTGAATGAATCATCACAAAACAGTGCACTCCAAGATTGGGACCCCAATGTGATGTTGAATAACCTGTCTTTCCTGGAAGAAAAGATTCATCAGCTCCAGGATCTAGTGCACTTGATTGTTCGTCAAAAAGGCATTGGACAACCTAATGAACTTGTAACACAGGAACAGCAGCTTATCACAACTGATCTCACATCAATCATTATTCAGTTGATCTCTACTGCAGGTAGTCTGCTCCCATCTGTTAGGCACAACCTTGCAAACACAGCTTCATTGTTTGGACAGATTGATCAGCTTCGTGAGACGACCATTCCTTCCGGGACTGGTGGAAGTAGCAGCTGTATTCAGCCAGAAAATAATGGTGGAAAGAAAATGTCTGATCAGTCCATGCAAACTGATCTACCTAATAACTGTGAAATGGAGCCAAACTACAATGTGGTAGAACAAGAACTCAAAGATGAAGAAGATGTAGATGATGGAGAAAACCTTGCCCCTGGTTCATATGAGATTCTACAATTAGAGAAAGAAGAAATCCTTGCTCCTCACACCCATTTCTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTGCGAATGCATATGCGTGGCCATGGCGACGAGTACAAAACCCCAGCAGCTCTTGCAAAACCTCACAAAGAATCTGGATCACCAAAGCTTATCAAGAGGTATTCCTGTCCCTATCCTGGCTGCAAGCGCAACAAGGATCACAAGAAGTTTCAACCTCTGAAGACTATCCTGTGTGTGAAAAACCATTACAAAAGGACACACTGTGACAAGAGCTACACATGCAGCAGATGCAACACCAAGAAATTCTCAGTCATGGCTGATCTGAAAACTCATGAAAAGCACTGTGGTAAGGATAAATGGTTGTGTTCATGTGGCACAACATTTTCTAGGAAAGACAAGCTTTTTGGGCACATTGCTCTTTTCCAGGGCCATACTCCAGCCATTCCCTTGGATGACGCCAAAGGGGTAGCTGAGCCACCCAATCATGACAGCAAAGAAAACAGTAAGGTGGGGAATGTGCAGTTCAGTTTTGGATCAAGTCCTTCTTCAAATGGAAATGAAGTTGAACATGTGATGGATGTAAAAGGCAATTGTGATGATCCTCTAAGTTTTTTCTCATCATTGAACTTTGACAACAGCTTTGGTGGGTTTAATGAATTCACTAGACCTCTGTTTGATGACTCAGAAGGCTCATTCTCTTTTGTGATTCCTGGATCTTTCAAATCCGACGGAGTATCCAGCCCTGACAATCTTTTGTAA 1539 0.4263 MDTNGSLRANNWARSSSLTSDSMSFPNFGLQNNQPKWDDPSNSDYGIRAEVPFKDFNQPSQTQSPLPCNSNNEIEIPNQENCHLNESSQNSALQDWDPNVMLNNLSFLEEKIHQLQDLVHLIVRQKGIGQPNELVTQEQQLITTDLTSIIIQLISTAGSLLPSVRHNLANTASLFGQIDQLRETTIPSGTGGSSSCIQPENNGGKKMSDQSMQTDLPNNCEMEPNYNVVEQELKDEEDVDDGENLAPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSPKLIKRYSCPYPGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCNTKKFSVMADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKGVAEPPNHDSKENSKVGNVQFSFGSSPSSNGNEVEHVMDVKGNCDDPLSFFSSLNFDNSFGGFNEFTRPLFDDSEGSFSFVIPGSFKSDGVSSPDNLL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00828 512 ProSiteProfiles Zinc finger C2H2 type domain profile. 266 293 IPR013087 -
Vian8g00828 512 MobiDBLite consensus disorder prediction 1 47 - -
Vian8g00828 512 SUPERFAMILY beta-beta-alpha zinc fingers 264 291 IPR036236 -
Vian8g00828 512 ProSitePatterns Zinc finger C2H2 type domain signature. 268 288 IPR013087 -
Vian8g00828 512 Gene3D Classic Zinc Finger 250 316 - -
Vian8g00828 512 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 80 488 IPR044300 GO:0010044|GO:0010447
Vian8g00828 512 MobiDBLite consensus disorder prediction 56 75 - -
Vian8g00828 512 MobiDBLite consensus disorder prediction 185 211 - -
Vian8g00828 512 SMART c2h2final6 352 374 IPR013087 -
Vian8g00828 512 SMART c2h2final6 314 347 IPR013087 -
Vian8g00828 512 SMART c2h2final6 266 288 IPR013087 -
Vian8g00828 512 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00828 Vian-Chr8 18527058 18528596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00828 233 496 C2H2 Transcription Factor Family AT1G34370 70.438 9.23e-133 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian8g00828 None None None