Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00822 ATGGAAGGTTCAGAGGAAGAAGAGCTTCTAAATCTTACTCTTTCGGTTGATGCAGGTGGAGAGAGGAGAAAGAAAGGAAGGGCAAGGGATGATGATACTAATTCTCTTGTTATTCCTATGAAGTCCAGTGAAGGGTATGAAGGGAAGATCTTTAGGCTGCTACAAATGAGGGAGCTGATGCTAAGAGAAGATCACAGAAGAAAAGGAGTGGTTGAAGATGGGAATAATGGTCTTCCTTTGATTCATTTGCTTCTTTCAACTGCCACTTCTATTGATGAGAGAAACTACTGTGCAACTCTTGAGAATCTGATTGAGTTGTATCAAACAGTTTCCCTAATAGGTGATTCAGTTCAACGTGTGGTGGCCTACTTTGCTGACGGTTTGGCTGCAAGGCTTCTCACAAGAAAGTCTCCTTTCTATGACATGGTCATGGAGGAACCAACAAGTGAGGAAGAGTTTCTTGCATTCACAGATCTCTATAGAGTCTCACCCTATTATCAATTTGCTCACTTCACAGCAAACCAGGCTATTTTGGAGGCCTATGAGGAGGAGGAAGAGAGGAACAACAAATCACTTCATGTCATTGACTTTGATGTCTCCTATGGCTTCCAATGGCCTTCTCTCATTCAATCACTTTCAGAAAAGGCAACCAGTGGCAACAGAATATCCCTCAGGATAACAGGTTTTGGGAACAACCTGAAAGAACTGCAAGAAACTGAGGCCAGATTAGTTAGCTTCTCCAAAGGGTTTAGTAACCAGCTAGTGTTTGAGTTCCAAGGGCTTCTAAGAGGCTCATCAAGGCTCATCAACCTGAGGAGAAAGAAAAATGAAACTTTGGCAGTGAACCTTGTTTCTTACTTAAACACTTTGAGTAGTTTCATGAAGGTCTCGGACACATTAGGCCTAGTTCATTCTCTTGGCCCCTCCATTGTGGTGTTGGTGAAACAAGAAGGTAGCAGGAGTCTGAAGACCTTCCTGTCAAGGTTCACTGAGTCTTTGCACTATTTTGCAGCCATGTTCGATTCACTAGATGATTGCTTGCCACTTGAGAGCACTGAGAGATTGAGGATTGAGAAGAAGCTTTTGGGGAAAGAGATCAAAAGCATGCTCAACTATGACATGGATGGTGTGGATTGCCCAAAGTATGAGAGGATGGAAACATGGAAAACAAGAATGGAGAATCATGAGTTTGTGGGAAGAAAAATTAGCTCAAAGTGTGTGATCCAGGCGAAGCTGCTTCTGAAGATGAGGACCCATTATTATCCTCTACAGTTTGAGGAAGAGGGTGGAAGTGGGGGTTTCAGAGTTTCTGAAAGGGATGAAGGAAGAGTTATCTCTTTGGGATGGCAAAATAGGTTTCTTCTCACAGTCTCAGCATGGCAACCAATTTGA 1392 0.4296 MEGSEEEELLNLTLSVDAGGERRKKGRARDDDTNSLVIPMKSSEGYEGKIFRLLQMRELMLREDHRRKGVVEDGNNGLPLIHLLLSTATSIDERNYCATLENLIELYQTVSLIGDSVQRVVAYFADGLAARLLTRKSPFYDMVMEEPTSEEEFLAFTDLYRVSPYYQFAHFTANQAILEAYEEEEERNNKSLHVIDFDVSYGFQWPSLIQSLSEKATSGNRISLRITGFGNNLKELQETEARLVSFSKGFSNQLVFEFQGLLRGSSRLINLRRKKNETLAVNLVSYLNTLSSFMKVSDTLGLVHSLGPSIVVLVKQEGSRSLKTFLSRFTESLHYFAAMFDSLDDCLPLESTERLRIEKKLLGKEIKSMLNYDMDGVDCPKYERMETWKTRMENHEFVGRKISSKCVIQAKLLLKMRTHYYPLQFEEEGGSGGFRVSERDEGRVISLGWQNRFLLTVSAWQPI 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00822 463 ProSiteProfiles GRAS family profile. 71 461 IPR005202 -
Vian8g00822 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 77 456 IPR005202 -
Vian8g00822 463 Pfam GRAS domain family 80 461 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00822 Vian-Chr8 18362872 18364263 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00822 66 461 GRAS Transcription Factor Family AT1G14920 32.763 2.31e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vian8g00822 GRAS 1.8e-86 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00822 - - gmx:100798251 776.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00822 8 18362872 18364263 Vian8g00822 8 18362872 18364263 ECH
Vian8g00822 8 18362872 18364263 Vian3g00812 3 8528333 8529718 PCT