Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00798 ATGGACGTGATATTATCTTCTGCTCAGACTAAGAACTCCGAGGATGTTGTGGCCAGTCCTCCAATTCAAATTGGGGGAACTGGAAAATCTTGTCATCAATGCCGGCAAAAAAAGGAGAATTTTGCTGCAACCTGCAAGAATATAAAGAAATCGAAGAATTGTCCGATTAAGTACTGCCACAAGTGCCTCTTGACTAGGTATGGGGAGAATGCTGAAGAGGTCGCGCAGTTGGCATATTGGACATGTCCGAAGTGTCGAGGCATTTGCAACTGTAGTCTTTGCCAAAAGCGACGAGGTGAACAGCCTACTGGTCCCCTATATCATAGTGCCAAGGAATCTGGCTTTAAGTCAGTTGCAGAAATGCTAGCAATGAAGAAGAATTTAGAAACATCAAATCCATTAAATGAGGGTAATCTGAAAAAGGAGCCTGAAGTATTTCTCTCAGGGGAACTTGGAAATGAATATTTTTCAGATGCAAATGTCACTGAAGTTTGCACCAAAGACGATAGTGGTGAGAATTTTGGAATGAACTTAGAGAGAGAAACAATTGCAGAGGAAATTCTTTTGCCACCTGGCATGGAGTTAAAAGAAATATTTGGCATCGAGTTACCACCCAAAGATGTTGGGAATGCATTGCAAATTTTAGAGTTTTGCAGAGTGTTTGGAAAGGCTCTTGATCTCAAGGAAGGAGAAGCTGAAGCCATTTTTAAAGAATTGATCAATGAAGAAATTATGGATGAACATAACTCTTCACTGATTCAATTTCACATTAAATTGTTGGGATTGATTGTAAGCAATTCGAAAAAAGAGTCTCCATCCTTCTCAACCAAGAATGAAACTAATTCATGGTTGAAACATTTAGAGGATTTGATTATGCAATCATATCACCTTCTAAATGATTTCCCTTTGGATTGGTTTCAAGAAGGCATCAGTGGATACTATAAATTGGATTTGTCTAAAAAGTTTAAACTGATGACTCTTCTTTGTGACGAAGTTTTGAACACTCAAAAACTAAGGAGTTATATTCAGGACGAAAATTCAAGGCATGCAAAAGTAGTGAAAGAAACAAAACTTAAGATTGCTGCAGCTAAGGAAAAGATAAAGTGTCTTGCACAAAAGTTGCAGAATGAGAATGCCAAAGTGTCCTCCATTCCAGGGGAGGAGCATGATGCTCATATAAAGATAAGAACTGAGGTTGACGAAGCACACATTGAGATGTTAAGGTTAAAGAGCACAGGTGAAAAATACAAAAGTGGATGTGATGCCACGAGAATCAATCCAGAGTTTGTGGACAACAATGGGATGACATTTTGGAAGTTACAAAGTTACAATGACGAATCGGTTCTTCTGCTGCAAGATATGAAGATACAAGATGAAACTGCTACTTTACCTGAAGAAAGCTGGTTTGTTTACGGTCTTCCAAAGAAGGACGAGATTGATAAATATATATCTTCAAGGGCTAAAAGACTTAAGAGTCTCAATTCTCAAAAAAGTTTGTAG 1500 0.3827 MDVILSSAQTKNSEDVVASPPIQIGGTGKSCHQCRQKKENFAATCKNIKKSKNCPIKYCHKCLLTRYGENAEEVAQLAYWTCPKCRGICNCSLCQKRRGEQPTGPLYHSAKESGFKSVAEMLAMKKNLETSNPLNEGNLKKEPEVFLSGELGNEYFSDANVTEVCTKDDSGENFGMNLERETIAEEILLPPGMELKEIFGIELPPKDVGNALQILEFCRVFGKALDLKEGEAEAIFKELINEEIMDEHNSSLIQFHIKLLGLIVSNSKKESPSFSTKNETNSWLKHLEDLIMQSYHLLNDFPLDWFQEGISGYYKLDLSKKFKLMTLLCDEVLNTQKLRSYIQDENSRHAKVVKETKLKIAAAKEKIKCLAQKLQNENAKVSSIPGEEHDAHIKIRTEVDEAHIEMLRLKSTGEKYKSGCDATRINPEFVDNNGMTFWKLQSYNDESVLLLQDMKIQDETATLPEESWFVYGLPKKDEIDKYISSRAKRLKSLNSQKSL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00798 499 PANTHER OS05G0300700 PROTEIN 27 391 IPR040221 GO:0006355
Vian8g00798 499 Coils Coil 353 380 - -
Vian8g00798 499 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 27 122 IPR018866 -
Vian8g00798 499 ProSiteProfiles DDT domain profile. 205 269 IPR018501 -
Vian8g00798 499 Pfam DDT domain 206 265 IPR018501 -
Vian8g00798 499 SMART testlast3 205 269 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00798 Vian-Chr8 16907987 16911929 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Vian8g00798 zf-4CXXC_R1 2.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00798 - - vun:114181676 717.227