Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00780 ATGGCGGCGGCGATTTCTGCTTCTATGGTGGTTCCAGCCACAGTGTTGAATGGTGCGCAATTCGGGAGTGCCTCTCTGTATGTCGGAGATCTCGACGCCAATGTGATAGAGAGTCAGTTGTTTGATCTGTTCAGCCACGTGGCTCAAGTGGTTTCGATTAGGGTTTGCAGGGATCAGACTAAGCGAACCTCCCTCGGTTATGCATATGTCAATTTCGCCAATGCTCAAGATGCTGCTTTTGCCATGGAACATTTGAACTTCACTCTTCTGAATGGAAAACCCATTCGGATTATGTTTTCTCACCGTGATCCCAGCATCAGGAAAAGCGGATTTGCAAATGTGTTCATTAAGAACCTTGATGCATCAGTAGATAACAAGGCACTGTATGACACATTTGCTGCCTTTGGAACTGTGCTATCTAGTAAGGTAGCAGTTGATGAGAATGGTCAATCAAAAGGGTATGGATTTGTGCAGTTTGACAATGACGAGTCTGCTCAGAATGCTATCAAAAAATTGAACGGCATGTTAATAAATGATAAGAAGGTCTATGTTGGGCTTTTTGTTCGGCGTCAGGAAAGGGCTCCAGGGAATGAATCACCAAAGTTCACCAATGTGTATGTGAAAAACTTTTCTGAAACATACACTGATGAAGACCTTAAGCAACTCTTCAATACCTATGGTACTATAACCAGTGCTGTGGTCATGAGAGACGGAGAGGGGAACTCCAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCCGCTACTGCCGTTGAAAAGTTGAATGGAACAACCATCAACAATGACAATGTTTTATATGTAGGGAGGGCTCAGAGGAAGGCAGAAAGAGAGGCAGAGTTGAAAGCTAAATTTGAACAGGAAAAAAAAAAAAAATTTGATAAACTTCAAGGTGCTAACTTGTATCTGAAAAACTTTGATGACAGTTTTAATGATGAAAAATTGAAAGAGATTTTTTCTGTGTTTGGAACAACAACATCTTGCAAGGTAATGGTTGACGCACTTGGTCGTAGCAAAGGTTGTGGTTTTGTTGCATTCTCTACTCCGGAGGAAGCCACTAGAGCCTTGGATGAAATGAATGGGAAGATAATTGGACAAAAGCCTCTGTATGTTGCAGTAGCCCAGCGAAAGGAAGAAAGGAAGGCTAATTTACAGGCCCAGTTTTCTCATATGCAAATTGCTGCTGGCATTACTGGATATCATCAAGCTTATTTTGGTCCAGGAACACCTGGGTTTGTCTCACCTCAGGCAACAGGCTATGGTTTTCAACCTCATGTCTTGCCACAAAGCATGCGTGGGGTTGCTCCAAATTACATTATGCCATACCACCTTCAGAGACAGGGTCCTCCTGGACAAAGGATGGGTCCTACTACACGAAGGATGGGAAATACCCAGGTAACTCTCAACCATTCACTTCCAATACCACCAACTGGTCCAAATGGCATACATAAGTATGTTGTGCCCTATAATCTGGTGGATCCATCTGACATTTCTGTATCTCCTATTGATGTCAAGACTTCTGCTTCATCATCAACTACCCTTGCTTCAGCTTTGGCTTCTGCTAGTCCGGAGAATCAACATAGGATGCTGGGTGAACATTTATATCCACTGGTGGAACGTCTTACTCCAAGTCATCAGACTGCAAAAGTCACAGGAATGCTGCTGGAAATGGATCAATCTGAAGTGATTCATCTTATTGAATCTCCTGAGGATTTGAAGACAAAGGTGTCCGAGGCAATGAAGGTGCTTCATGATGCAGCAGGTTCTGAAGTTGGTGATCAACAAAAGTGA 1815 0.4298 MAAAISASMVVPATVLNGAQFGSASLYVGDLDANVIESQLFDLFSHVAQVVSIRVCRDQTKRTSLGYAYVNFANAQDAAFAMEHLNFTLLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDASVDNKALYDTFAAFGTVLSSKVAVDENGQSKGYGFVQFDNDESAQNAIKKLNGMLINDKKVYVGLFVRRQERAPGNESPKFTNVYVKNFSETYTDEDLKQLFNTYGTITSAVVMRDGEGNSRCFGFVNFESPDSAATAVEKLNGTTINNDNVLYVGRAQRKAEREAELKAKFEQEKKKKFDKLQGANLYLKNFDDSFNDEKLKEIFSVFGTTTSCKVMVDALGRSKGCGFVAFSTPEEATRALDEMNGKIIGQKPLYVAVAQRKEERKANLQAQFSHMQIAAGITGYHQAYFGPGTPGFVSPQATGYGFQPHVLPQSMRGVAPNYIMPYHLQRQGPPGQRMGPTTRRMGNTQVTLNHSLPIPPTGPNGIHKYVVPYNLVDPSDISVSPIDVKTSASSSTTLASALASASPENQHRMLGEHLYPLVERLTPSHQTAKVTGMLLEMDQSEVIHLIESPEDLKTKVSEAMKVLHDAAGSEVGDQQK 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00780 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Vian8g00780 604 SUPERFAMILY RNA-binding domain, RBD 11 105 IPR035979 GO:0003676
Vian8g00780 604 Gene3D - 288 393 IPR012677 -
Vian8g00780 604 Pfam Poly-adenylate binding protein, unique domain 526 591 IPR002004 GO:0003723
Vian8g00780 604 SMART rrm1_1 308 380 IPR000504 GO:0003723
Vian8g00780 604 SMART rrm1_1 204 277 IPR000504 GO:0003723
Vian8g00780 604 SMART rrm1_1 113 185 IPR000504 GO:0003723
Vian8g00780 604 SMART rrm1_1 25 98 IPR000504 GO:0003723
Vian8g00780 604 FunFam Polyadenylate-binding protein 290 395 - -
Vian8g00780 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 272 IPR000504 GO:0003723
Vian8g00780 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Vian8g00780 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 96 IPR000504 GO:0003723
Vian8g00780 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 309 377 IPR000504 GO:0003723
Vian8g00780 604 FunFam Polyadenylate-binding protein 110 193 - -
Vian8g00780 604 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 24 591 IPR006515 GO:0003723
Vian8g00780 604 CDD RRM4_I_PABPs 306 384 - -
Vian8g00780 604 PANTHER RNA BINDING PROTEIN 24 86 - -
Vian8g00780 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723
Vian8g00780 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 307 384 IPR000504 GO:0003723
Vian8g00780 604 SUPERFAMILY RNA-binding domain, RBD 304 394 IPR035979 GO:0003676
Vian8g00780 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Vian8g00780 604 SUPERFAMILY PABC (PABP) domain 447 595 IPR036053 GO:0003723
Vian8g00780 604 Gene3D - 188 287 IPR012677 -
Vian8g00780 604 FunFam Polyadenylate-binding protein 194 289 - -
Vian8g00780 604 SMART rrm2_1 25 98 IPR003954 GO:0003676
Vian8g00780 604 SMART rrm2_1 113 185 IPR003954 GO:0003676
Vian8g00780 604 SMART rrm2_1 204 276 IPR003954 GO:0003676
Vian8g00780 604 SMART rrm2_1 308 380 IPR003954 GO:0003676
Vian8g00780 604 Gene3D - 112 186 IPR012677 -
Vian8g00780 604 Gene3D - 515 595 - -
Vian8g00780 604 Coils Coil 276 299 - -
Vian8g00780 604 FunFam Polyadenylate-binding protein 17 109 - -
Vian8g00780 604 Gene3D - 19 111 IPR012677 -
Vian8g00780 604 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 518 596 IPR002004 GO:0003723
Vian8g00780 604 SUPERFAMILY RNA-binding domain, RBD 113 282 IPR035979 GO:0003676
Vian8g00780 604 Coils Coil 382 402 - -
Vian8g00780 604 CDD RRM3_I_PABPs 202 282 - -
Vian8g00780 604 SMART poly_2 530 594 IPR002004 GO:0003723
Vian8g00780 604 FunFam Polyadenylate-binding protein 514 597 - -
Vian8g00780 604 CDD RRM2_I_PABPs 110 185 IPR045305 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00780 Vian-Chr8 16053960 16057281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00780 5 592 Eukaryotic Initiation Factors Gene Family AT1G22760 54.792 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00780 K13126 - gmx:100783163 808.52