Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00777 ATGGGGCTAGATATCAGTAGAAGAACACACAAGTACCACGACCAACCCTTACCCAAGATGTTGTGGGTAGACAAATATCGTCCCAAAACCCTCGACCATGTTATGGTCCACACCGATATCGCTCACAATCTCAAGAAATTGGTGAAGGAACAAGATTGCCCCCATTTACTCTTCTATGGCCCTTCTGGCTCTGGCAAGAAAACCCTAATCATGGCCGTTCTCCGCCAAATGTTTGGATCTGGTGCTGAAAAGGTGAAGGTGGAAAATAGGACGTGGAAAGTGGATGCTGGGAGTAGATCTCTTGATATAGAGTTGACAACATTGTCAAGTGCCAACCACATTGAAATAAGTCCGAGTGATGCAGGATTTCAAGACAGATATGTTGTTCAAGAGGTAATCAAAGAAATGGCTAAGAATAGACCCATTGATACTAAGGGGAAGAAAGGATTTAAAGTACTCGTGCTCAATGATGTTGACAAACTCTCTAGAGAGGCTCAACATTCTCTTCGGAGAACAATGGAAAAATACAGTGCTTATTGCAGACTAATTCTATGCTGCAATAGTTCTTCTAGAGTCACAGAAGCAATCCGCTCTAGATGTCTCAATGTAAGGATAAACGCACCAAGTGAAGAACAGATTCTTGAAGTTTTAGAGCTCATTGGTAGGAAAGAAGAGCTGCAACTTCCTGCTGGTTTTGCTGCTCGCATTGCAGAGAAATCAAATCGGAATTTAAGGAGGGCAATATTGACATTTGAGACTTGTCGTGTGCAACAGTATCCTTTCACTAACAAACAAACAATTCCTCCAATGGACTGGGAAGAACATATTTCTGAAATTGCATCTGACATAATGAAAGAACAGAGCCCCAAAAGGTTGTTTCTAGTTCGAGGGAAGATTTATGACTTGCTAATAAATTGTATTCCTCCGGAGATGGTTTTGAAGAGGCTTCTTCATGAGCTGTTGAGGAAGCTGGATGCAGAGCTAAAGCATGAAGTATGTCATTGGGCTGCATATTATGAACATCGGATGCGTCTTGGACAAAAGGCAATCTTTCACATCGAAGGGAGAAATTTAAGATCCATTTGCCTTGCCATGTATCCGCTTCCTTACTCTGTTTTCCTCTCTAAGGTTTTTGAGTATTACAATGTTGGTTTAAAGGATGAAACTTTCAAACTTGTAACTTCATCATCTCAGAACACTCAAAATGCCCATTATGATAGGGATGAAGCAAATGAAGAAGCATATGACAAAAAGAAAGATGTATTCAGTTATGAGGTGCGTATTCGGTTACGCTATAGAGTGAGAAGAAAGCTGGGTGCTGTATTCGATTCTGCTTCGTTGCATTTGGTTCCAGAGGTGGACCGGTCTACACCGGTTGGTTCTTCTTCTTCTACATTGCATAACGAGAGGTTGGGGAGTGAGACGAAGTCTTCATTTGTTTCTCCGGTGAGTCGGATAGTGTTGTTGAAGATAATTCTGAGTAGAGAGAAAAAGGAAAGCGTTTTGGAATGTGTGGTGGGAGGGTGCAGCTCCACAACCACCGAGTTAGATGTAGAATGGGAAGAGTGTGAGTTGGGAAGTTATTCATGA 1590 0.4189 MGLDISRRTHKYHDQPLPKMLWVDKYRPKTLDHVMVHTDIAHNLKKLVKEQDCPHLLFYGPSGSGKKTLIMAVLRQMFGSGAEKVKVENRTWKVDAGSRSLDIELTTLSSANHIEISPSDAGFQDRYVVQEVIKEMAKNRPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLILCCNSSSRVTEAIRSRCLNVRINAPSEEQILEVLELIGRKEELQLPAGFAARIAEKSNRNLRRAILTFETCRVQQYPFTNKQTIPPMDWEEHISEIASDIMKEQSPKRLFLVRGKIYDLLINCIPPEMVLKRLLHELLRKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEGRNLRSICLAMYPLPYSVFLSKVFEYYNVGLKDETFKLVTSSSQNTQNAHYDRDEANEEAYDKKKDVFSYEVRIRLRYRVRRKLGAVFDSASLHLVPEVDRSTPVGSSSSTLHNERLGSETKSSFVSPVSRIVLLKIILSREKKESVLECVVGGCSSTTTELDVEWEECELGSYS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00777 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 259 IPR027417 -
Vian8g00777 529 Pfam DNA polymerase III, delta subunit 38 207 - -
Vian8g00777 529 FunFam replication factor C subunit 3 209 267 - -
Vian8g00777 529 CDD AAA 40 209 - -
Vian8g00777 529 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 22 347 - -
Vian8g00777 529 FunFam Replication factor C subunit 3 271 364 - -
Vian8g00777 529 SUPERFAMILY post-AAA+ oligomerization domain-like 270 360 IPR008921 GO:0003677|GO:0006260
Vian8g00777 529 Gene3D - 271 363 - -
Vian8g00777 529 Gene3D - 209 268 - -
Vian8g00777 529 FunFam Replication factor C subunit 5 19 208 - -
Vian8g00777 529 SMART AAA_5 52 211 IPR003593 GO:0016887
Vian8g00777 529 Gene3D - 20 208 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00777 Vian-Chr8 15991288 16002169 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00777 20 355 Core DNA Replication Machinery Family AT5G27740 81.250 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00777 K10756 - gmx:100818329 623.239