Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00770 ATGCTAAAAGCACCTCTCTGTTATGTGACCCTAAAATCCCCACAGTTTGCAGCCATGGCGGGAGCTACAGGAAGAACCCTCTTCACCTTCTCCCTTTCTTCCTCTTCTTCTTATTCTTCCTTCACGCGCTTCCTCGCCAAGCGCGTCCCACTACGCAAAGCCCTCCCTCTTCTCCCCCGCTTCCGCCCACTCTGCTCCGTCGCTGCTGCGCCGGAAACCGCCGACGCGAAGCATTCTTTACTCCTCGAGAGGCTCCGGGCGCGACACCTCAGGGATGCCGCGAGAATCGCCCCCGAACCGAGGAAGAAGGCCAGGGGCGCCGCCGTTGCGGAGGCTGAGAAAGAGAGGGCGAAGAAGGAGAAGAAGGTGGTTGCCAGTTTCGAGGAGTTGGGAGTGAGTGAAGAAGTTATGGCGGCGGTTAGTGAAATGGGGATTGATGTACCCACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGGCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGTTGCTACGACGGGATGAACAATTGAATGGAATACTGTTGAAGCCCAGGCGTCCGCGAGCTGTTGTATTGTGTCCTACAAGGGAGTTATCTGAGCAGGTTTTTCGAGTAGCAAAATCGATAAGCCATCATGCCCGATTTAGGTGTACCATGGTAAGTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGAAGGGTTCTTCAGCATATTGAGGAGGGCAACATGGTGTATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGTTTTGGTCCTGATATACGCAAGTTTCTGGGCCCATTAAAAAATCGCGCTTCAAAACCTGATGGTCTTGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGCTGTTCAAAAGCTGATTGATGAAGAGTTTCAAGGCATTGTTCATCTGCGCACATCAACATTGCATAAGAAGATTTCTTCTGCTCGTCATGATTTTATTAGACTTTCAGGTTCTGAGAACAAGCTTGAAGCATTACTGCAGGTACTAGAACCAAGCCTTGCAAAGGGTAACAGGGTGATGGTTTTCTGCAATACATTGGATTCTAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACTGTAAACTACCATGGTGAGGTACCAGCAGAGCAAAGGGTTGAAAATCTCAGAAAGTTTAAGAGTGATGGTGATGATTGTCCTACGTTGGTTTGCTCGGACCTGGCTGCTAGGGGTCTAGACTTGGATGTAGATCATGTTGTGATGTTTGACTTCCCCTTGAATTCTATTGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAGGTAACAAGTTTAGTTGCTAAAAAGGACTTGGACTTGGCCAGCAAAATAGAGGAAGCAATAAGGAACAATGAGAGTTTGGAGGCTATCACAAAAGAAAGTGTTCGAAGGGACACTGCAAGGACCCAAATCACAGAGCAGAAAGGAAAGGGTAGAAAAATGGTTCAAGTTTCAAAAGTCAAGGGCAAATTTGGTAGTCGTTCCAGTTCTGGAAATAATGGATCAGGTATAAAATCTGGCAAAGCTTCACCAGTCAAATCTATGAAAAAAGGGATTAACGTTTCAAAATCTGGGAATTCTTCTAGGGCAAGTAGCACCATTAGAAAAGGTTCTTCAGATAAGAGGCAAACAGGTAAAGTGGTCAGTACCACCAAATCTACGAATTCTAAACTCAATGTGGTTGGTTTTCGGGGAAAAAAATCATCTTCAAATAACAATGGTTCGGTTTTGTGA 1899 0.4676 MLKAPLCYVTLKSPQFAAMAGATGRTLFTFSLSSSSSYSSFTRFLAKRVPLRKALPLLPRFRPLCSVAAAPETADAKHSLLLERLRARHLRDAARIAPEPRKKARGAAVAEAEKERAKKEKKVVASFEELGVSEEVMAAVSEMGIDVPTEIQGIGIPAVLEEKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGILLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKNRASKPDGLGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKISSARHDFIRLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLGENQISTVNYHGEVPAEQRVENLRKFKSDGDDCPTLVCSDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLDLASKIEEAIRNNESLEAITKESVRRDTARTQITEQKGKGRKMVQVSKVKGKFGSRSSSGNNGSGIKSGKASPVKSMKKGINVSKSGNSSRASSTIRKGSSDKRQTGKVVSTTKSTNSKLNVVGFRGKKSSSNNNGSVL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00770 632 SMART ultradead3 144 353 IPR014001 -
Vian8g00770 632 Coils Coil 109 129 - -
Vian8g00770 632 CDD SF2_C_DEAD 356 488 - -
Vian8g00770 632 Gene3D - 92 344 IPR027417 -
Vian8g00770 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 499 IPR027417 -
Vian8g00770 632 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Vian8g00770 632 Pfam Helicase conserved C-terminal domain 368 479 IPR001650 -
Vian8g00770 632 Gene3D - 349 572 IPR027417 -
Vian8g00770 632 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 518 IPR001650 -
Vian8g00770 632 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Vian8g00770 632 MobiDBLite consensus disorder prediction 572 589 - -
Vian8g00770 632 CDD DEADc 136 335 - -
Vian8g00770 632 MobiDBLite consensus disorder prediction 514 530 - -
Vian8g00770 632 MobiDBLite consensus disorder prediction 598 632 - -
Vian8g00770 632 MobiDBLite consensus disorder prediction 514 632 - -
Vian8g00770 632 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
Vian8g00770 632 SMART helicmild6 397 479 IPR001650 -
Vian8g00770 632 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 80 516 - -
Vian8g00770 632 MobiDBLite consensus disorder prediction 544 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00770 Vian-Chr8 15790044 15804444 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00770 124 501 Eukaryotic Initiation Factors Gene Family AT3G19760 27.013 1.38e-40 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00770 - - gmx:100805709 957.592