Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00748 ATGATGAGTGAGATGGAAATCGAGAGATACACGAGTCAGCGGTGGCGCCCAACAGATGATCAGGTCAAGATGATGACCAACATCTTCAACTATGGGGTCACTCATCCAAGCCGAGCGCAAGTCGTCGAGATCACGTCTCGACTAAGGACCTTCGGAGATGCCAGCGAATACAACGTGCACTGCTGGTTCAACAACCACGGCAATCGGGTCAGGCGCTGGCAAGCGGAGATAGACCCCACTGGCACTCAGTTTTCACAACTGCCGCTGTACATGTATGACAATTTTTTTTTGTTGAAAGAATACGACTGGGTAATAATGAGGGCACCGAGGCTGCTGGACCTCTTCCCCATTCCCATCATAATCGATCCAGAAACAGAGATTCCTCCGCCTCCGCTCGTGACTTTTCGTACCAGAGCTCCCTCAACGGAGCTCTCCCTTAGACCACCACAACCAGCTCGACAATTCTTTCGTTGA 474 0.5127 MMSEMEIERYTSQRWRPTDDQVKMMTNIFNYGVTHPSRAQVVEITSRLRTFGDASEYNVHCWFNNHGNRVRRWQAEIDPTGTQFSQLPLYMYDNFFLLKEYDWVIMRAPRLLDLFPIPIIIDPETEIPPPPLVTFRTRAPSTELSLRPPQPARQFFR 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00748 157 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 76 IPR044559 GO:0003700
Vian8g00748 157 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Vian8g00748 157 ProSiteProfiles 'Homeobox' domain profile. 8 73 IPR001356 GO:0003677
Vian8g00748 157 Gene3D - 12 77 - -
Vian8g00748 157 Pfam Homeodomain 12 72 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00748 Vian-Chr8 15214997 15215531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00748 1 76 Wox Gene Family AT5G59340 38.158 1.36e-13 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vian8g00748 Homeodomain 5.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00748 - K24144 vum:124821070 243.047