Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00747 ATGAACTTTCCTCCTACGGCTGAGGAGCTCAAAGCACTAAGGAGCAGGATCAACGCCAACATTGTTGCAGTCCTAAAGAAGGCCAGGGCGATTCGGACCCAGCTCGAGGAGATGGACCGGGCCAACGCCGCCAACCGGAGGCTCTCCGATCTCAAGGATGGCACGCCGGCCATCTACCGGACCCGGATCGCTGTCACCAATGGGCTGAGGAAGAAGCTGAAGGAGCTGATGATGGAGTTCCAGGGGTTGAGGCAGAGGATGATGAGTGAATACAAGGATACTGTGGGGAGAAGGTACTTCACAGTGACTGGGGAGTACCCAGATGAGGAGGTGATTGAGAAGATCATTGCAAATGGTAATGAGGAAGAGGTTTTAGGGAAGGCGATTCAGGAGCATGGGAGAGGGAAGGTTCTGGAAACTGTGGTGGAGATTCAGGATAGACATGATGCTGCTAAGGAAGTGGAGAAGAGTTTGCTGGAGCTGCATCAGGTGTTTCTGGACATGGCTGTGATGGTTGAGGCACAGGGTGAGAAAATGGATGACATTGAGCATCATGTGTTGCACGCTTCGCACTATGTTAAGGATGGGACCAAGAATCTCCACACTGCAAAGCATTACCAGAAGAATAGCAGGAAGTGGATGTGTATTGGGATCATATTGCTGCTCATTCTTATTCTGGTTATTGTTATTCCTGTTGCCACCAGTTTAAGCGGTTCTTGA 720 0.5056 MNFPPTAEELKALRSRINANIVAVLKKARAIRTQLEEMDRANAANRRLSDLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMSEYKDTVGRRYFTVTGEYPDEEVIEKIIANGNEEEVLGKAIQEHGRGKVLETVVEIQDRHDAAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLHTAKHYQKNSRKWMCIGIILLLILILVIVIPVATSLSGS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00747 239 Gene3D - 4 98 - -
Vian8g00747 239 SUPERFAMILY t-snare proteins 7 196 IPR010989 GO:0016020|GO:0016192
Vian8g00747 239 Gene3D - 137 236 - -
Vian8g00747 239 CDD SynN 10 128 IPR006011 GO:0016020
Vian8g00747 239 SMART SynN_4 4 92 IPR006011 GO:0016020
Vian8g00747 239 CDD SNARE_syntaxin1-like 140 200 - -
Vian8g00747 239 Pfam SNARE domain 178 229 IPR000727 -
Vian8g00747 239 Pfam Syntaxin 6 176 IPR006011 GO:0016020
Vian8g00747 239 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 141 203 IPR000727 -
Vian8g00747 239 Coils Coil 66 86 - -
Vian8g00747 239 ProSitePatterns Syntaxin / epimorphin family signature. 147 187 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vian8g00747 239 SMART tSNARE_6 136 203 IPR000727 -
Vian8g00747 239 PANTHER SYNTAXIN 8 225 IPR045242 -
Vian8g00747 239 FunFam Syntaxin 132 134 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00747 Vian-Chr8 15207011 15208156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00747 7 239 SNARE and Associated Proteins AT1G08560 69.658 1.06e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00747 K08486 - gmx:100816016 409.838