Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00732 ATGGCTCTAGTTGTGAGGTTTCCTCCCAAGGTTTGTTGTTGTGATAAGGATATGATGCTTCCTCAGATTTTACGTTGTAATATTATCATCTATAAAGGTTGGTATTTTTGTTGTAACCTAAAGATGTTAGTGTGCTCGTTGTATTTTGAAACATTTTTTCTTTTCTATTTACGTAAAAATAAAATCCTTGCAGGGGGCAGTAAATTTATTTCTCATAACCCTAATTTTGGGGATATATTAATTTTTGGTTTACCTCAGACATCATTTAGTAAAAGGCCTAAGTGTGTTATATGCGGCCGCTACGGTGAATACATATTGGCACCGGTTTTGTCATTCTATGCCTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCTATAGTTTCTCGTTGTGTGATTCATCGCCAGCAATATGTTTCAGTTAAGAAGAAGCCTTTGGTTATGGTGTTAACACCCACCAGAGAGCTCTGTATACAGGTCGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACTGCACTTGTGGTTGGTGGTGACGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCGGGAAGACTTGTTGATCTTCTAAGTAAGCATGAGATTGACTTGGATGATGTCATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGGGCTCTGTCACAACCCCAGGTCTTGATGTATTGTGCCACAATGTCTAATGATTTAGAGAAGATGATTAACACGCTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGAGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAATTGTTTGACATTTTGACAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGATCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATTACAGTTGCCACTGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTTATTGGTGAGGTCCCAGTGGTTGTGGCTACTGGAGTTTTAGGCAGGGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATTCCTAATTCCATTAAGGAATACGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAACAAGAATGTCTTTCCAGACTTAATTGATATTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGATTTTTCTATGGTGGGAAGGCTTCGAAAAAGAGAAAGAACACAGGATAG 1533 0.4149 MALVVRFPPKVCCCDKDMMLPQILRCNIIIYKGWYFCCNLKMLVCSLYFETFFLFYLRKNKILAGGSKFISHNPNFGDILIFGLPQTSFSKRPKCVICGRYGEYILAPVLSFYACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHRQQYVSVKKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLSKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYCATMSNDLEKMINTLAKGTVVISVGEPNRANKAVKQVAIWVESKQKKQKLFDILTTKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFFIGEVPVVVATGVLGRGVDLLGVRQVIVFDIPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFPDLIDILKSGGAAVPRELANSRYATGFFYGGKASKKRKNTG 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00732 510 Gene3D - 328 508 IPR027417 -
Vian8g00732 510 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 491 IPR001650 -
Vian8g00732 510 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 110 138 IPR014014 GO:0003724
Vian8g00732 510 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 141 317 IPR014001 -
Vian8g00732 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 466 IPR027417 -
Vian8g00732 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 319 IPR027417 -
Vian8g00732 510 Gene3D - 105 327 IPR027417 -
Vian8g00732 510 CDD SF2_C_DEAD 329 461 - -
Vian8g00732 510 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 110 478 - -
Vian8g00732 510 SMART ultradead3 129 332 IPR014001 -
Vian8g00732 510 Pfam DEAD/DEAH box helicase 134 305 IPR011545 GO:0003676|GO:0005524
Vian8g00732 510 Pfam Helicase conserved C-terminal domain 342 452 IPR001650 -
Vian8g00732 510 Gene3D - 86 104 - -
Vian8g00732 510 SMART helicmild6 370 452 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00732 Vian-Chr8 14721057 14727553 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00732 106 489 Eukaryotic Initiation Factors Gene Family AT3G19760 26.923 1.10e-50 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00732 K19466 - gmx:100784491 723.776