Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00704 ATGCAAGGGAAGAGTTCTCCCCCTCTTGATGAGGTGAAAAAAGAAGCTTTCAACTTTCCTATTCCTCTCACACCATCTCAAAATCCAAAAGAACAAGCTTCATCATCAACCTTTTCAAACTTTCTTATGACTACCAACCATCAAAACACCACCTTCTTCCCCACTCCACATGGTCAAATAACCACTTCTAAATTTATCAATACCCAAGATCCATCTCAAGCTACAAATCAAGGTAATGCTGATCTTAGGAAAAGGCACTATAGAGGAGTTAGGCAAAGACCTTGGGGAAAATGGGCAGCTGAGATAAGAGACCCTAAGAAAGCAGCGAGAGTGTGGCTTGGCACCTTTGACACAGCAGAAGCTGCAGCAATGGCCTATGATGTTGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTCAATTTTCCTGAGCGTGTTGCTGTGCCACCACCATCACCGGAAACCACCACCACCATTTCTTCAGCTTCTGCACAACCCTCTTCCCTCACATCACCACCACCACATGTTGGTGGCGATCATCAAACTCTAGAAACATCAGAAGAAGCAGAAGGGTTTCCAAGTCTGATGGAGTATGCACGGTTGCTGAAATGTAGGGATGATGATGATTTCCAACGTGTTGCATTGGGGCTTTACCAGCACCATCCCAATGAGGATGTTATCTACGGTTCATCTCAGCCACCACCTGCGCCATTTTTTCTGTCTTCTTCATCTTCTTCTACATTTGCATCTTCAACTTCTCAGGGTGATTATGGTTCTTCTGGATTCTTTAGTCAAGGAGGGAGTGGTTTTGATGAAGGGAACAAGAGAGGATCATAG 837 0.4456 MQGKSSPPLDEVKKEAFNFPIPLTPSQNPKEQASSSTFSNFLMTTNHQNTTFFPTPHGQITTSKFINTQDPSQATNQGNADLRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAMAYDVAALKFKGNKAKLNFPERVAVPPPSPETTTTISSASAQPSSLTSPPPHVGGDHQTLETSEEAEGFPSLMEYARLLKCRDDDDFQRVALGLYQHHPNEDVIYGSSQPPPAPFFLSSSSSSTFASSTSQGDYGSSGFFSQGGSGFDEGNKRGS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00704 278 SUPERFAMILY DNA-binding domain 86 144 IPR016177 GO:0003677
Vian8g00704 278 MobiDBLite consensus disorder prediction 151 175 - -
Vian8g00704 278 CDD AP2 86 144 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 MobiDBLite consensus disorder prediction 228 278 - -
Vian8g00704 278 MobiDBLite consensus disorder prediction 1 34 - -
Vian8g00704 278 MobiDBLite consensus disorder prediction 235 267 - -
Vian8g00704 278 Gene3D AP2/ERF domain 85 145 IPR036955 GO:0003700|GO:0006355
Vian8g00704 278 MobiDBLite consensus disorder prediction 144 190 - -
Vian8g00704 278 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Vian8g00704 278 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Vian8g00704 278 PANTHER DNA-BINDING DOMAIN 44 187 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00704 Vian-Chr8 13797086 13798709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00704 67 148 AP2-EREBP Transcription Factor Family AT5G61890 78.824 2.84e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vian8g00704 AP2 8.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00704 - - gmx:100806383 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00704 8 13797086 13798709 Vian8g00704 8 13797086 13798709 ECH
Vian2g01576 2 32720344 32722905 Vian8g00704 8 13797086 13798709 PCT
Vian8g00704 8 13797086 13798709 Vian3g00733 3 7704717 7705532 PCT