Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00683 ATGCGAATGAGTTGTAATGGGTGTCGTGTGTTGCGAAAAGGGTGCAGTGAAGATTGTACAATAAGACCGTGTTTGGAATGGATCAAGAACCCAGAATCGCAGGCTAATGCCACCGTTTTTCTTGCTAAGTTCTATGGTCGTGCTGGCCTCATGAATCTCATCAACGCTGGTCCTCAAAACCTTCGACCAGCGATTTTTCGTTCGTTGTTGTACGAGGCATGTGGTCGAATTGTGAACCCAATTTACGGGTCAGTGGGTTTGTTATGGTCGGGGAGCTGGCAGCTGTGTCAAGCCGCCGTGGAAGCCGTTTTGAAAGGCGAGCCGATCACACCAATCACATCGGAAGTGGCGGCGAATGGGCGGGCCCCACCTCTGAAGGCATGCGACATTCGCCACGTGTCAAAAGACGAGAACACGGCGAATCGGACTCAAAAGGCCAAGACTCGAATCCGGGTTAAGCGAACCTGCGGCGACGTTCTTATCAAACCGAAAGCCCCGACGGTGACCGGGTTTGTTCCGGTTGAAGCGGAGACGAACCAGACTACGAGTCATGAATCGGGACTGAGCCACTTGTCGGAAGCTGCAGCCATCGTGGAAGGAGAGAGTAAAGAGAGTGAAAGTGTGGTGTCGGTGGAAACTTGCAACCTATTTGGTGAGACAAAGACGAGTGATCGATTCGGTGCAACTAATGATGAAATTGGTTTGGAATTGAGGCTTGGGTTGGAACCGGTTTCACGTGAGCATCACATGGTTCCAATGAAGAAGAGAAGAATAGAAGTGAAAAGTAGCTGTGACTTAATGGAGTTAGGACTTGAGTCCTCGGCTTGA 828 0.5048 MRMSCNGCRVLRKGCSEDCTIRPCLEWIKNPESQANATVFLAKFYGRAGLMNLINAGPQNLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGEPITPITSEVAANGRAPPLKACDIRHVSKDENTANRTQKAKTRIRVKRTCGDVLIKPKAPTVTGFVPVEAETNQTTSHESGLSHLSEAAAIVEGESKESESVVSVETCNLFGETKTSDRFGATNDEIGLELRLGLEPVSREHHMVPMKKRRIEVKSSCDLMELGLESSA 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00683 275 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Vian8g00683 275 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Vian8g00683 275 PIRSF AS2 164 272 IPR017414 -
Vian8g00683 275 PIRSF AS2 1 159 IPR017414 -
Vian8g00683 275 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00683 Vian-Chr8 12876612 12877945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00683 1 264 AS2 family AT3G02550 60.806 5.40e-106 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vian8g00683 LOB 6.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00683 - - gmx:100814175 415.231