Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00676 ATGGAAGCGGAAGAGAATCTGCAGAGGTTGCAATCTCTTCTGTTGGGTGCGGAACACGCTCTAGCAAACAAGGACTTCGCCTCCGCTTACGTCCTCGCGCTTCGTCTTCTCGGCTTCCTCGACGTGAAGTCCCACTCTGACGCTGTCGATGAGGCCTTCCTTCAACCGACTCGTCGCGACGCACTCTCCAAGCTCCACACCGCTCGCAGATCCCTCATCCCTCAATCTGATCGGCAAGCTTTTGAGCAAGCAAAGAAATCTCCAGGATACATTTTTGGCACAACAGGAGATATTGACATTGAGAAGATTCGGAATTCAAAGTACTTCCGTGCTCTTGTCAACCAATCTAAAGAAAAAGATGCGTATAAATTGGTTGATCACCCGGGGAAACAGGGCAAAACGGGCAGCAAAGCCTCGAAGCAAATGGTGCAAACGAAGTTATCATCCATGTATGGGAAAAGCAGTTTGTGGACTAGCAACTGTTCCCAGAGTTCTTTGAACATGAAAAACTACAGTTCTGAGGATTGCAGGATTCTTGGTAGGCCTCAATCTCAAGCCAGCCATACAAAGGGTCCTGGTGTCTCTTCTATCTTTCAAGTTGAAGGAGAAGAAAGAGCTTTTGGAAACACATTCTCCACCAAACGTGTACACGTGGAAACTAATAATCTCAGAGTTGGATATTTGAAGTCACCTTCAAATAAGGACGAAATTCACCCTGATGTTTGTGGCAAAGGGTTTATTACTGCTAGAGCAAAACTGGAAATTGAAGAAAAGCAGAAGCGAGGAGCAGGCGGTTCACCCTGTAACTCTGTCTCACCGCAGTGTGATAACAGTCCTGCCAACAGGTTACATGGTGGGAGATCATATAGTGTTTCACGACGTGGTTTCCGTAGTAATTTTGTTCCCCCTATAAAATCCAATGGGAATAATGCTGGAAATATGAGTGCACGAAATGCTGGAAAATGTGATGATTCTTTAGATGAATCTACAAGGAAATGTTTGGAAATCCTGTGTGGTCCTGATGGTGAGCTTCCAGAGAAATTGAGGAATTTGGAACCTCGCCTCATTGAACATGTTAGTAACGAGATCATGGATAAAGATCCCAATGTCCGGTGGGATGATATTGCTGGATTGGAGCATGCCAAGAAATGTATTGATGAGATGGTAATATATCCTTTGCAACGTCCTGACATATTCATGGGCTGCCGTTCACCTGGGAGGGGTCTTCTTTTGTTTGGTCCACCAGGAACCGGTAAAACAATGATAGGAAAAGCCATAGCAGGGGAGGCGAAGGCAACCTTCTTTTACATATCTGCAAGTTCGTTGACTAGCAAGTGGATTGGTGAAGGTGAAAAGCTAGTGAGAGCCCTTTTTGGAGTTGCCAGTTGCCGTCAGCCTGCTGTAATTTTTGTTGATGAAATAGATTCTCTCCTGTCTCAGCGTAAATCAGACGGTGAGCATGAATCCAGTAGACGTCTAAAGACACAGTTTCTCATTGAAATGGAAGGCTTTGACAGTGGTAGCGAGCAAATTCTGCTTATAGGGGCAACGAATCGTCCCCAGGAGCTTGATGAAGCAGCACGAAGGAGACTTACTAAAAGGCTTTATATTCCCCTACCATCCTCAGAAGCAAGAGCTTGGATTGTACGTAACCTTCTACAGAAAGATGGACTATTCAATCTTTCAAACGAGGAAATGGATATCATATGCATCTTAACGGAAGGTTATTCAGGATCAGACATGAAAAACTTAGTGAAGGATGCTTCTATGGGACCCCTAAGAGAGGCTTTAAAAAAAGGCATAGAAATTACAAAGTTGAAAAAGGAGGATATGCGAGGAGTAACTCTTCAGGACTTCGAGAGCTCCCTCAGAGAGGTGAGGCCTTCTGTTTCCCCAAATGAACTTGGGACGTATGATCAATGGAACAAGCAATTCGGAAGCTTATCATTGTAG 1953 0.447 MEAEENLQRLQSLLLGAEHALANKDFASAYVLALRLLGFLDVKSHSDAVDEAFLQPTRRDALSKLHTARRSLIPQSDRQAFEQAKKSPGYIFGTTGDIDIEKIRNSKYFRALVNQSKEKDAYKLVDHPGKQGKTGSKASKQMVQTKLSSMYGKSSLWTSNCSQSSLNMKNYSSEDCRILGRPQSQASHTKGPGVSSIFQVEGEERAFGNTFSTKRVHVETNNLRVGYLKSPSNKDEIHPDVCGKGFITARAKLEIEEKQKRGAGGSPCNSVSPQCDNSPANRLHGGRSYSVSRRGFRSNFVPPIKSNGNNAGNMSARNAGKCDDSLDESTRKCLEILCGPDGELPEKLRNLEPRLIEHVSNEIMDKDPNVRWDDIAGLEHAKKCIDEMVIYPLQRPDIFMGCRSPGRGLLLFGPPGTGKTMIGKAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGEHESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARRRLTKRLYIPLPSSEARAWIVRNLLQKDGLFNLSNEEMDIICILTEGYSGSDMKNLVKDASMGPLREALKKGIEITKLKKEDMRGVTLQDFESSLREVRPSVSPNELGTYDQWNKQFGSLSL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00676 650 FunFam Fidgetin like 1 540 626 - -
Vian8g00676 650 Gene3D - 368 642 IPR027417 -
Vian8g00676 650 MobiDBLite consensus disorder prediction 258 282 - -
Vian8g00676 650 Pfam AAA+ lid domain 572 610 IPR041569 -
Vian8g00676 650 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 645 IPR027417 -
Vian8g00676 650 Gene3D - 540 626 - -
Vian8g00676 650 ProSitePatterns AAA-protein family signature. 511 530 IPR003960 GO:0005524|GO:0016887
Vian8g00676 650 Pfam ATPase family associated with various cellular activities (AAA) 409 539 IPR003959 GO:0005524|GO:0016887
Vian8g00676 650 SMART AAA_5 405 541 IPR003593 GO:0016887
Vian8g00676 650 MobiDBLite consensus disorder prediction 265 282 - -
Vian8g00676 650 FunFam Fidgetin-like 1 368 550 - -
Vian8g00676 650 Pfam Vps4 C terminal oligomerisation domain 613 646 IPR015415 -
Vian8g00676 650 PANTHER AAA DOMAIN-CONTAINING 222 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00676 Vian-Chr8 12696911 12715321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00676 346 648 Calmodulin-binding Proteins AT3G56690 31.169 3.08e-40 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00676 K22766 - gmx:100789161 1094.34