Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00668 ATGTTCCCTTACAGTTCCACCCCCTACCCTTCCTTCCCTTCATCATCTTCTTCCTTCCATCCTTTTCCTTTCCTCAACCTTGAGAATGCTTCTGCAGGAAACACCCTTCTTCACGATCCACTTTCTGTGCCTTACTTACCAACTCATCACAACCCTCCAAACATCCAAGAGGCACTGAGCAATTTGCCAGTCACAGATCATAACTGTGGTGGTGGAGGTTCTGCAATGACCAAACCTGACCCAAGTGGTGGTGGTGCTGCTGCTGCTGCTCCTCACTATGGCCTCTCTTGTTTCCTCACAAAGAAGCCAGTTAAGAAAGACAGGCACAGCAAGATTTACACCTCTCAGGGGTTGAGGGACCGGAGGGTGAGGTTATCCATTGAGATTGCTCGCAAGTTCTTTGATCTTCAAGACATGCTAGGGTTTGACAAAGCCAGCAACACCCTTGAGTGGCTCTTCAACAAGTCCAAGAGAGCAATTAAGGAGCTGGCAAGGAGCAAGAACAGCACCAACAGTGAAGAAGGAGCCAAGAGCTTCTCTTCTTCATCTGAGTGTGATGATGACTGTGAAGTGGTTTCGGAGATCAAGCAGAAGCAACAACTCATCACTGGTGATGCTGCTGCTCCAAACAACCTACAACAAGGGTTAGATTCAAGCGATAACAAGTCACCGACATTTCTGGCTGCAAGGGAGAGGATGAAGTTGAAAAGGGCACAGAAGGAACCTGCAAAGATGAAGGAGTCAAGGGAGAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGTAACAAGATCATGTGCAATGTTAATTCCAACACAGGGAGGGTGCAACAAGACCTGAAGAAAAAGTGCCCTGCAATTGAAAATAGCCACTCTCATCACCTTGTTGGAAGTGAAGCACCTAGAGATGATTTCAACGTTATTGAGGAATCAATTGTGATAAAGAGAAAGTTGAAGCCATCATTGATGTCCTCTTCTCATCACCATCACCAAAACCTTATGATCCCTAAGGAACCACCATGTTTCAACAACAACAACATTGAGTACCACCACCCTTTCTCCAATTTATCTCCGAATTGGGATGCTAATGGATCCACTGGCCGCTCCAACTTCTGTGCCATAGCTAGCATGAATCTATCCACAGGGCTTCAAATCTTTGGAAAGTCTTGGGAGGAGTGCACCAATCCACGTTTACACTAG 1197 0.4628 MFPYSSTPYPSFPSSSSSFHPFPFLNLENASAGNTLLHDPLSVPYLPTHHNPPNIQEALSNLPVTDHNCGGGGSAMTKPDPSGGGAAAAAPHYGLSCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFNKSKRAIKELARSKNSTNSEEGAKSFSSSSECDDDCEVVSEIKQKQQLITGDAAAPNNLQQGLDSSDNKSPTFLAARERMKLKRAQKEPAKMKESREKARARARERTSNKIMCNVNSNTGRVQQDLKKKCPAIENSHSHHLVGSEAPRDDFNVIEESIVIKRKLKPSLMSSSHHHHQNLMIPKEPPCFNNNNIEYHHPFSNLSPNWDANGSTGRSNFCAIASMNLSTGLQIFGKSWEECTNPRLH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00668 398 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 85 347 IPR005333 GO:0003700
Vian8g00668 398 Pfam TCP family transcription factor 104 264 IPR017887 -
Vian8g00668 398 MobiDBLite consensus disorder prediction 235 259 - -
Vian8g00668 398 ProSiteProfiles TCP domain profile. 105 163 IPR017887 -
Vian8g00668 398 MobiDBLite consensus disorder prediction 164 185 - -
Vian8g00668 398 ProSiteProfiles R domain profile. 246 263 IPR017888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00668 Vian-Chr8 12479385 12480695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00668 101 334 TCP Transcription Factor Family AT1G67260 35.918 3.13e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vian8g00668 TCP 1.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00668 - - gmx:100801549 600.897