Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00655 ATGAAGCATTCCGAATTCCATGCTGTTTTGCTTTTGTCCATCTTTGTGGGAATCGGCTTAGCTTATCCCACAGAGGATCAGTTAAGGGATAGGATTACCAAGCTGCCAGGACAGCCAGAGAACGTGCTTCTTTCTCAGTACTCGGGCTATGTGACTGTGAACGAGGAAGCTGGAAGAGCTTTGTTTTATTGGCTGGTAGAGACAGAAGCTAGTAGTTCAAAGCCACTTGTTTTGTGGCTTAATGGTGGCCCTGGATGTTCCTCTATTGCTTACGGAGCAGCTGAAGAAATTGGTCCTTTTCGAATCAATCCTGATGGCAAATCACTTTACTCCAATCCTTATGCTTGGAACAAATTGGCAAATATACTCTTCCTCGATTCTCCTGCTGGTGTTGGATTTTCATATTCCAACACCACATCAGATCTGTATACAGCAGGTGACCAGAAAACAGCTGAAGATGCATATACGTTCCTTGTTAATTGGCTTGAAAGGTTTCCTCAGTACAAGCACAGAGATTTCTACATTGCCGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGTCTCAAGTCATTTATCGCAAAAATAAAGGAATCGAGAACCCAGATATAAATTTCAAGGGGTTTATGGTTGGAAATGCTGTGATAGATGATTACCATGACTACATTGGAACATTTGAGTACTGGTGGGTCAATGGTTTGATTTCAGATGACACATATAAACTGCTGAGAATTGTGTGTGAGTTTGATTCTTCTCAGCATCCACCAGAGAAATGTGCGGAAGCTTTTGAACTTGCAAGTCTTGAGCAGGGAAACATTGATCCATATAGCATTTATACTCCTGTGTGCAATGCTACAGCTGCAACACTCAAACCCCATTTAAGGGGTCGCTTAGGAAGACTGTATGGAGCATACGATCCTTGCACTGCGACGTATTCTGAGGTGTATTTCAATCGTCCAGAAGTTCAGAAGGCTCTTCATGCGAACGTAACTGGGATTCCTTATTCATGGACAGGATGCAATGATATTGTTGGGAACAATTGGGGTGATTCTCCGCTTTCTATGCTTCCAATATACCAAGAAATTCTTGATGCTGGCCTCAGGATATGGGTCTACAGTGGAGACACTGATTCGGTGGTGCCTGTAACTGCGAGTCGGTATTCAATTGCTTCATTGAACCTACCTACCATCATCAACTGGTACCCTTGGAATGATAATGATGGCCAGGTTGGTGGGTGGAGTCAAGTTTACAAGGGACTTACATTTGTTGCAGTAAGAGGTGCAGGGCATGAGGTTCCACTTCATAGACCTCGTCAAGCTTTTACCCTTTTCAAATCATTCCTCCAGAACAAAAACCTGCCATTTTCAACTCTTACCTCTCAATCACTCAACCATAAACTTAGATCAGTTAGGCCCAAAAGAAAGATCACTATGCCATCTTCCATGCACCACTTTCCTAGTTAG 1464 0.4303 MKHSEFHAVLLLSIFVGIGLAYPTEDQLRDRITKLPGQPENVLLSQYSGYVTVNEEAGRALFYWLVETEASSSKPLVLWLNGGPGCSSIAYGAAEEIGPFRINPDGKSLYSNPYAWNKLANILFLDSPAGVGFSYSNTTSDLYTAGDQKTAEDAYTFLVNWLERFPQYKHRDFYIAGESYAGHYVPQLSQVIYRKNKGIENPDINFKGFMVGNAVIDDYHDYIGTFEYWWVNGLISDDTYKLLRIVCEFDSSQHPPEKCAEAFELASLEQGNIDPYSIYTPVCNATAATLKPHLRGRLGRLYGAYDPCTATYSEVYFNRPEVQKALHANVTGIPYSWTGCNDIVGNNWGDSPLSMLPIYQEILDAGLRIWVYSGDTDSVVPVTASRYSIASLNLPTIINWYPWNDNDGQVGGWSQVYKGLTFVAVRGAGHEVPLHRPRQAFTLFKSFLQNKNLPFSTLTSQSLNHKLRSVRPKRKITMPSSMHHFPS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00655 487 FunFam Carboxypeptidase 26 285 - -
Vian8g00655 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Vian8g00655 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 420 433 IPR001563 GO:0004185|GO:0006508
Vian8g00655 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Vian8g00655 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Vian8g00655 487 FunFam Carboxypeptidase 305 453 - -
Vian8g00655 487 SUPERFAMILY alpha/beta-Hydrolases 29 453 IPR029058 -
Vian8g00655 487 Gene3D - 355 450 - -
Vian8g00655 487 Gene3D - 308 344 - -
Vian8g00655 487 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Vian8g00655 487 FunFam Carboxypeptidase 355 450 - -
Vian8g00655 487 Pfam Serine carboxypeptidase 36 450 IPR001563 GO:0004185|GO:0006508
Vian8g00655 487 Gene3D alpha/beta hydrolase 27 285 IPR029058 -
Vian8g00655 487 ProSitePatterns Serine carboxypeptidases, histidine active site. 420 437 IPR033124 GO:0004185
Vian8g00655 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 437 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00655 Vian-Chr8 12106396 12109499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00655 313 453 Calmodulin-binding Proteins AT2G22960 29.577 2.00e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00655 K16297 - gmx:100796815 791.186