Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00603 ATGTCTTCTGTTCAAATGGTTTCTGCAAGTGCCATCAATTTTAAGCTACCTTACCAAATTCTGAGGCATGATGGCCCTTTGTCTGATGATGAGGATGAGAGAGATCAGAGGGTAACCCTAAGGCCTAAGAAGTGGGTCAGGCTTAGAGGGGTGCCCTTGAGGAGAAGGTTAAGGGTGAAAATGGCAAGTTGGAGGAAGATTTGGATGATGAAAAAAGTTATGCTTGTGTGTGCTAAGGTGAAGAAAAGGTTCAAAGAGGGACATGGTCATTTTGGTGACCTATTTGCTGGGAACTATCTCTTCACTCAAATCAACCCAACATCACTCAAATGGAAGGATGCTTCTTTCCCTAAGCTTGTTTATCCACTAGTGCACCCTGCTGTTTTGGTGGAAACATATGAGAAGGGTGAGAGTGTCGCCTATTATGTTGATGATCTTCAAGGACATGAACGGCTTAAATCTTCTATTGCTCATATTGGGACTCACGCACTTCTGAAAATGCTTCTGGTGGACAACTTCATTCATGCAGACATGCATCCTACAAATATCCTTGTTCGAGTGGCTCAAAGAAAGTCGCGAAAACGACTCTTCAAATCAAAGCCTCATGTAGTTTTTCTTGATGTGGTCAAGCCTCCACTTTTACCAGAGTCATCGTTGGTGACCCCGATCACCTTCAGAGTTTTATCGGTTGCTATTGAATTGTTTTTGGTATGTGCTGTGTTGCAGAATATGGGTCGCGCAAGAATAACCTTAAAACAAATCTCCAATGAAAGATCCCGCAAGACAACTTTCTTGCGAAGAAAGACAGGGCTAATGAAGAAAATCTCGGAATTTTCGAAGAGGTGTGGTGGTGAGCACTGTTTGATTATGTACGATGATAATGCTGATGGTGATGTTGAAGCAGTGACTTCGCCCGAAAACCCTGTAGAGATACACTCCATGATTCAAAAGTACTATGAAACTCAATTAAAGAAAGAGAGACCTCACAAGACTTATGGTATTGAAGAGTTTTTTAAGAACAGAAAGAAAATGATTGAAGCTGAGATTTCCAAAGTGCATAAACAAATCAGCAGCATCAAGTACCCAACTTGGGATCCAAGTTTCGTGAACATGGAAGAGGATCAATTGAGGGCCTTGTGTGCTCGTGTGGAGGCCAAAATTGAAGCTTGTGATGAGGGAATTAAATTGCTGAAGAACCACAAGAATGTACCCAGTTTGATGCAGAATTTCTCACACGGCCAAATCATCCAAACTCCAATCCAGGCACTTGATAATGAAATTAGTTATTTGTTGAGAAACATGCAAGAGGGTGGTGGTGATGATGCTTGGTTTAGTTTTGTGCCAAACATGGCTCAGGAAAATGCTACTGCTACCACCTCACATCCAAACCAAGTCAATTGTTTGCAAAACATCTCTCAAAGTCAACCATTGCTTGAAGATTTTATGGAACTTTATGATAAGAATTATGAAGCAGTTGATGTGCCACTGAATTCAATCAATCTATTCAGTGAGCTGGAGGTTGAGGAATTGATTAGGGAACTTTCTAATGAAGGATGTGATAATCCTGTGGGTTTTAGCAGTCAACCTCATGAATCTATCTTGCCAAGTATTTCTGCTGAATATCAAAATCAGCACCAAGGAGGAGGACCTTTGAACGCCTTGCCTCAAACCAATTACTATGACATGCTTTTCTGA 1695 0.4124 MSSVQMVSASAINFKLPYQILRHDGPLSDDEDERDQRVTLRPKKWVRLRGVPLRRRLRVKMASWRKIWMMKKVMLVCAKVKKRFKEGHGHFGDLFAGNYLFTQINPTSLKWKDASFPKLVYPLVHPAVLVETYEKGESVAYYVDDLQGHERLKSSIAHIGTHALLKMLLVDNFIHADMHPTNILVRVAQRKSRKRLFKSKPHVVFLDVVKPPLLPESSLVTPITFRVLSVAIELFLVCAVLQNMGRARITLKQISNERSRKTTFLRRKTGLMKKISEFSKRCGGEHCLIMYDDNADGDVEAVTSPENPVEIHSMIQKYYETQLKKERPHKTYGIEEFFKNRKKMIEAEISKVHKQISSIKYPTWDPSFVNMEEDQLRALCARVEAKIEACDEGIKLLKNHKNVPSLMQNFSHGQIIQTPIQALDNEISYLLRNMQEGGGDDAWFSFVPNMAQENATATTSHPNQVNCLQNISQSQPLLEDFMELYDKNYEAVDVPLNSINLFSELEVEELIRELSNEGCDNPVGFSSQPHESILPSISAEYQNQHQGGGPLNALPQTNYYDMLF 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00603 564 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 254 294 IPR002100 GO:0003677|GO:0046983
Vian8g00603 564 PRINTS MADS domain signature 266 281 IPR002100 GO:0003677|GO:0046983
Vian8g00603 564 PRINTS MADS domain signature 246 266 IPR002100 GO:0003677|GO:0046983
Vian8g00603 564 SMART madsneu2 244 305 IPR002100 GO:0003677|GO:0046983
Vian8g00603 564 Gene3D - 256 345 IPR036879 GO:0003677|GO:0046983
Vian8g00603 564 ProSiteProfiles MADS-box domain profile. 244 294 IPR002100 GO:0003677|GO:0046983
Vian8g00603 564 PANTHER AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) 110 208 - -
Vian8g00603 564 SUPERFAMILY SRF-like 244 323 IPR036879 GO:0003677|GO:0046983
Vian8g00603 564 Pfam ABC1 atypical kinase-like domain 110 202 IPR004147 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00603 Vian-Chr8 10978454 10993491 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00603 244 388 Type I MADS-box Gene Family AT5G55690 33.784 1.66e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vian8g00603 SRF-TF 2.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00603 K08869 - pvu:PHAVU_004G060500g 340.502