Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00594 ATGGCTGCCCTTTCATGTTTCATTCTTCTTTTTGCTCTTTCTCTTCTCACACGCTCTTTTGTTTCTTCCTCTGCAGTTCCAGATCCTGAATTGGTTGTTCAAGAGGTACAAAGAAGCATCAATGCCTCAAGGAGAAACTTGGGTTATTTATCATGCGGAACCGGGAATCCCATCGACGACTGCTGGCGGTGCAACCCTAACTGGGAGAACAACCGCCAGAGACTAGCGGACTGCGCCATCGGGTTCGGCAAGGACGCCATCGGCGGAAGAAACGGCCGAATATACGAGGTCACAGACTCCGGCAACGACGACGCCGTGAACCCAAAGCCGGGAACCCTCCGTTACGCCGCCATACAAGACGAACCCCTGTGGATAATCTTCAAGAGGGACATGGTCATCACGCTAAAGCAAGAGCTTCTGGTGAACTCTTTCAAGACAATCGACGGCAGAGGCGCGAGCGTGCACATCGCCGGTGGGGGCTGCATCACCATACACTACGTAAGCAACGTGATCGTTCATGGGATTCACATTCACGATTGCAAGCCCACCGGGAACACCAACATCAGAGACTCGCCGGAGCACTCCGGGTTTTGGACGAAATCGGACGGAGACGGAATCTCCATCTTTAACTCGAAGCATATTTGGATCGATCATAACTCGCTGTCGAATTGTCAGGATGGGCTGATCGATGCCATTCATGGATCCACTGCCATCACCATCTCCAACAATTACATGACCCACCATGACAAGGTTATGCTTTTGGGACACAGTGATTCCTACACGCAGGACAAGAACATGCAGGTCACCATAGCCTTCAATCATTTTGGAGAAGGTCTTGTCCAAAGAATGCCAAGGTTTCTTGCTCCAGACATTAGGTTCAGCAAAGAGGTAACAAAGCATGAGGATGCTCCACAGAGTGAGTGGATGAGCTGGAATTGGAGATCAGAGGGTGACATGTTCTTGAATGGAGCATACTTCAGGCAATCTGGTGCTGGTGCTTCTTCCATCTATGCTAGAGCTTCAAGTCTCAGTGCAAGACCTTCTTCTCTTGTTGGATCCATGACCGTCACTGCTGGTGCACTTACCTGCAGAAAGGGAAACCGTTGCTGA 1110 0.5045 MAALSCFILLFALSLLTRSFVSSSAVPDPELVVQEVQRSINASRRNLGYLSCGTGNPIDDCWRCNPNWENNRQRLADCAIGFGKDAIGGRNGRIYEVTDSGNDDAVNPKPGTLRYAAIQDEPLWIIFKRDMVITLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNVIVHGIHIHDCKPTGNTNIRDSPEHSGFWTKSDGDGISIFNSKHIWIDHNSLSNCQDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRFLAPDIRFSKEVTKHEDAPQSEWMSWNWRSEGDMFLNGAYFRQSGAGASSIYARASSLSARPSSLVGSMTVTAGALTCRKGNRC 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00594 369 Gene3D - 55 362 IPR012334 -
Vian8g00594 369 PRINTS Pollen allergen Amb family signature 202 223 IPR018082 -
Vian8g00594 369 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Vian8g00594 369 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Vian8g00594 369 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Vian8g00594 369 PANTHER PECTATE LYASE 18-RELATED 285 367 IPR045032 GO:0030570
Vian8g00594 369 Pfam Pectate lyase 137 285 IPR002022 -
Vian8g00594 369 SUPERFAMILY Pectin lyase-like 56 360 IPR011050 -
Vian8g00594 369 SMART amb_all 130 299 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00594 Vian-Chr8 10807816 10810318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00594 7 369 Polysaccharide Lyase AT5G63180 65.920 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00594 K01728 - gmx:100794814 691.034