Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00585 ATGAAGTGTTCGCACAGAGGCAATGGCGACGGCGTCGGCGACGACGTGGGAGGTGGAAAAAATAAAGCAAGTGAGCAAGTAGAACGCCACCACTCTCATGGTCACACGCTCCCAGTTCCTCAAACTCAAGAATCAAATCAACGCTCCGTCGCAAACGGCCGCGAAGTCCTCGACGAAGCCGCGACATACGGCAAGATGTTCGATGACCTCGGCCTGGCGGAGTGGGTCGTTAATACGTGTCAGGAGCTCGAAATGCGGATGCCACGACACGTGCAGCAGCGTTGCATACCGCCTATGCTAGAGGGTCGGCACGTGCTTGGCATCGACGAGACTGGGAGCGGAAAAACGGCGGCCTTTGTTCTTCCGATCCTACATCGACTCGCTGAGCACCCCTTCGGTGTTTTCACAATCGTAGTGACGGCCACGCGCGAACTGGCGTTCCAGCTAGCAGAGCAGTTCCGCGCTCTAGGCTCTGTCGTGCACCTCCGCATCACGGTTGTGGTAGGCGGCATGGATATGCTCAAGCAGGCGAAGGATTTGGTTGCGAGGCCGCACCTCGTCATTGCCACACTTGGGAGAATCCACGTCTTGCTCCGTGATAACCCTGATATTTCTTCTGTTTTCTCCAGAACCAAGATCGAGTTTTGGATGCTTGTTTTCAGGAGGAATTGA 672 0.5551 MKCSHRGNGDGVGDDVGGGKNKASEQVERHHSHGHTLPVPQTQESNQRSVANGREVLDEAATYGKMFDDLGLAEWVVNTCQELEMRMPRHVQQRCIPPMLEGRHVLGIDETGSGKTAAFVLPILHRLAEHPFGVFTIVVTATRELAFQLAEQFRALGSVVHLRITVVVGGMDMLKQAKDLVARPHLVIATLGRIHVLLRDNPDISSVFSRTKIEFWMLVFRRN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00585 223 MobiDBLite consensus disorder prediction 1 49 - -
Vian8g00585 223 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 65 218 - -
Vian8g00585 223 MobiDBLite consensus disorder prediction 21 35 - -
Vian8g00585 223 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 223 IPR014001 -
Vian8g00585 223 Pfam DEAD/DEAH box helicase 90 200 IPR011545 GO:0003676|GO:0005524
Vian8g00585 223 Gene3D - 56 218 IPR027417 -
Vian8g00585 223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 202 IPR027417 -
Vian8g00585 223 SMART ultradead3 84 220 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00585 Vian-Chr8 10425643 10426874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00585 88 200 Eukaryotic Initiation Factors Gene Family AT5G11200 36.207 2.85e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00585 K14778 - var:108345186 301.212