Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00577 ATGGGCAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGCTGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAAGATAAAAAAGAGGTTGAAGGTCCTTGGTTTGGACCCTTTGACCCTGATGCCAATTGAGCAAAAGCAGCAACAGTCTGGTGATGATGACAAACTCAAGACAGAGAAACAGCAAAAAAGCACTTCAAAAGGGTCTGACCAAGGTGTGGATAGCAAACCCTTGGACATGCATGCCACAGGAGAAGAGCCAAAAACAGAAGACAAAATGGAAGAAAAAAAGGTAACATGGGATGACACCACTGGTTTTCTGAACAATTATGAAATGTTGTGCTCACAGTTGGAGTTGGGATCATGGTTGAGCCAAGAAACCAAAGCCAGCACCAGCTCTTACTGTAGTTCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCTGTCTGTGAATCCTCTTATCTTCAGGAAAATTCCTTGCAACAATGGGTTGAGGATTTGGATTCCAGTCTCTCATGGGATAGCTTCAATCCACTTCACACTGATTTTCCCTTCTTGGAAAATAGGCAATAA 831 0.4188 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKVLGLDPLTLMPIEQKQQQSGDDDKLKTEKQQKSTSKGSDQGVDSKPLDMHATGEEPKTEDKMEEKKVTWDDTTGFLNNYEMLCSQLELGSWLSQETKASTSSYCSSSFSLDDSSNLSVCESSYLQENSLQQWVEDLDSSLSWDSFNPLHTDFPFLENRQ 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00577 276 Gene3D - 11 67 - -
Vian8g00577 276 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 236 - -
Vian8g00577 276 CDD SANT 16 61 IPR001005 -
Vian8g00577 276 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vian8g00577 276 MobiDBLite consensus disorder prediction 134 150 - -
Vian8g00577 276 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vian8g00577 276 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vian8g00577 276 FunFam MYB transcription factor 11 67 - -
Vian8g00577 276 MobiDBLite consensus disorder prediction 165 182 - -
Vian8g00577 276 CDD SANT 70 110 IPR001005 -
Vian8g00577 276 MobiDBLite consensus disorder prediction 130 182 - -
Vian8g00577 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vian8g00577 276 SMART sant 13 63 IPR001005 -
Vian8g00577 276 SMART sant 66 114 IPR001005 -
Vian8g00577 276 Gene3D - 69 157 - -
Vian8g00577 276 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vian8g00577 276 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vian8g00577 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vian8g00577 276 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00577 Vian-Chr8 10228161 10229285 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00577 1 137 MYB Transcription Factor Family AT5G16600 75.000 1.37e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00577 Myb_DNA-binding 5.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00577 K09422 - gmx:100819471 474.167