Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00558 ATGGCAGCTACATTCCCACCTGTCACAGATATAAGGAGCGGTTTCAATCCAGCTTCCAGAACCTTCCACAGCCTCAAACCACCACTTCTTCTCCCTCCTCCCAACGCTGCCATCTCCGCCGCTTCCTACGTCCTCTTCCTCCGTCGCAACTCGCACTTTCCGGACTCCTCAACCGCCGTTGTCGACTCCGCCTACGGCCATAGCCTCTCCTACGGCGAACTCATCCACCGCGCTGAGAACCTAGCTGCCAACCTCGCCACAGTTCTCAAACTATCAAAAGCCCACACCGCGCTCGTTCTCTCCCCTAACATCATCCAAGTTCCGATCCTCTGCTTCGCGCTACTCTCCCTCGGCGTGGTCGTCTCCCCCGCGAATCCTCTTTCCACACGCTCCGAGATCACTCGCCTCTTCCACCTCAGCAAACCAGCCATCGTCTTCGCAGTGACTTCAAACGCAGAAAAAACACACGAGTTCCATGTCCGCACGGTCCTCCTCGACTCGCCTGAGTTCGACTCCCTCACCAGGACAAAGATACAGCCTCTGAGTCCAACCACGTCCCCCACGCCGGTGACTCAGTCCGACGTGGCAGCCATTCTGTACTCTTCCGGCACGACGGGAAAGGTGAAGGGCGTTATGCTTACTCACCGCAACCTAACCGCAATAGCCGCGGGATACGACACGGTCCGCACGAAGCGCGCGGAGCCCGCAGTGTACCTCTATACGGTGCCGTATTTCCACGTGTACGGTTTCACCTTCAGCCTGGGGGCGATGGTGCTGTCGGATACGGTGGTGATAATGGAGAGGTTCAGTTTGAGGGGCATGCTGAGCGCCGCGGAGAGGTTCCGAGTGACGCACATTACGGTGGTGCCGGCACTGGTAGTAGCTTTGACGAAGGACAAAGTGATAGACAGATACAATTTGACGTCGTTGGAAGGGATCGTTTGCGGTGGAGCTCCACTGAGGAAGGAAACCGATGAAGCTTTCAAAGCCAAGTTCCCCAAGGTCCTCGTCATGCAGGGATACGGTTTAACCGAATGTGTGGTTACCCGAACCACTCCCGAGGAAGCTAATCACGTGGGAACAGTGGGTAGACTGAAACCAGACATAGAAGCAAAAGTTGTTAACCCACAAACAGGGAAACTCATGTTTCCTGGTGAAAGGGGTGAACTATGGATCAAAGGACCTTATGTTATGAAAGGTTATGTTGATGATCCAGAAGCAACTTCAGCAACTTTGGTGAATGGATGGTTAAGGACTGGAGACCTTTGTTATTTCGATAATGATGGTTTCTTGTATATTGTTGATAGGTTAAAAGAGCTGATCAAATACAAGGGCTACCAGGTTGCTCCAGCAGAGCTAGAAGAGTTGCTCCTATCTCACCCAGACATACGTGATGCTGCAGTTATTCCATACCCTGACAATGAAGCAGGCGAAGTGCCCATGGCGTTTGTTGTGAGACAACCTCAAAGTTCCCTTGGCGTAGCACAAGTTATCGATTTTGTTGCCAAACAGGTCCTTTTTTTCCTCTGCGTTGCTTTCTTGTCTACATTTCAATTTTCAGTCATACGTAGTTTCACAAACTTCTAG 1587 0.5211 MAATFPPVTDIRSGFNPASRTFHSLKPPLLLPPPNAAISAASYVLFLRRNSHFPDSSTAVVDSAYGHSLSYGELIHRAENLAANLATVLKLSKAHTALVLSPNIIQVPILCFALLSLGVVVSPANPLSTRSEITRLFHLSKPAIVFAVTSNAEKTHEFHVRTVLLDSPEFDSLTRTKIQPLSPTTSPTPVTQSDVAAILYSSGTTGKVKGVMLTHRNLTAIAAGYDTVRTKRAEPAVYLYTVPYFHVYGFTFSLGAMVLSDTVVIMERFSLRGMLSAAERFRVTHITVVPALVVALTKDKVIDRYNLTSLEGIVCGGAPLRKETDEAFKAKFPKVLVMQGYGLTECVVTRTTPEEANHVGTVGRLKPDIEAKVVNPQTGKLMFPGERGELWIKGPYVMKGYVDDPEATSATLVNGWLRTGDLCYFDNDGFLYIVDRLKELIKYKGYQVAPAELEELLLSHPDIRDAAVIPYPDNEAGEVPMAFVVRQPQSSLGVAQVIDFVAKQVLFFLCVAFLSTFQFSVIRSFTNF 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00558 528 Pfam AMP-binding enzyme 49 443 IPR000873 -
Vian8g00558 528 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 17 513 - -
Vian8g00558 528 CDD 4CL 50 508 - -
Vian8g00558 528 Gene3D - 439 518 IPR045851 -
Vian8g00558 528 Pfam AMP-binding enzyme C-terminal domain 452 504 IPR025110 -
Vian8g00558 528 Gene3D - 33 438 IPR042099 -
Vian8g00558 528 SUPERFAMILY Acetyl-CoA synthetase-like 48 505 - -
Vian8g00558 528 ProSitePatterns Putative AMP-binding domain signature. 198 209 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00558 Vian-Chr8 9706558 9716518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00558 10 505 Monolignol Biosynthesis Gene Families AT5G63380 47.582 1.86e-158 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00558 K01904 - gmx:100784234 780.785