Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00557 ATGTTCCAAGGTGGTACAATGAGACAGTTTTGCTACCTTTATCTTGTTGTTCTTTCATGGTTCTTTTTCATCCCAAACACTTATGAGTTACAAGCTGCTCAGACACAAGCATTGCTGCAGTTAAGAGTTCATCTAGAGTATCCCTCCTCTTTACAGATATGGCAATATTACCAGGGGGACCTTTGTACGCTCTCTCCATCTGCAAACCTGAGCATTAAATGTGAAGATGATGAGGTAACCGAGCTTAAAATTACGGGTGAAAAATCTTCGAAGCCACCACGGTTCAATGGATATCCAGTTCCTAATCACACTCTATCCATGAATTTCTCCATTGATTCCTTTTTCATCACTTTGACAGAGTTGACCACCTTAAGGGTTCTTAGCTTGGTGTCCTTGGGGATTTGGGGGCCACTTCCTGATAAGATTCACAGTTTCACTTTGCTTCAAGTTTTGGACTTGAGTTCCAATTTCTTATTTGGAGCCATTCCACCTAAAATATCCACAATGGTAACGCTTCACACACTGACCCTTGATGACAATTATTTTAACACCACTATGCCCGATTCCTTTGATTCTCTGTCCAATCTGAATATCTTGAGTATGAAGAGCAATGGCTTAAAGGGTTCATTCCCCTCCTCACTGGGAAATATTAAGACACTTGAAGTTATTTCCTTGTCCCACAATGAGTTGTCTGGTGACCTGCCTGGTCTCAGTTCTCTCACTGGCCTACATGTTCTGGATTTAAGAGAAAACCATTTAGAATCTGAACTACCATTGTTGCCAAAATATGTGGTCACTGTGCTGCTTAGCAATAACTCATTTTCAGGAGAGATACCTAAGCAGTTTCAAGAACTGGATCAGCTTCAACATCTTGATCTTTCTTCAAATTTTCTCAGTAAGACACCCCCATCTGCCTTGTTTTCTCTGCCAGAAATAAGTTATTTGAATCTGGCAAGCAATGTGCTAAGTGGGACCCTCCCAGACAAACTTAACTGTGGTAGCAAACTTGGGTTTGTGGACATTTCTCGTAACAAGCTAAGTGGTGGACTTCCTTCTTGCTTGGCGAATACATCTGACAGTAGAGTTGTTAGATATGCTGGAAACTGTCTATCTGTTGACTCTCAGAACCAGCACAGAAGGTCTTATTGCAAAGAATCCACCTCTGGATGGAAAAGCTTCAAGACATGGGAACTAGCTGTAGTAATGGCCATCGTTGTTGTACTTGTTCTTGTGGTTTTGGTTTCTAGCGTCTTCTTATGGAAAAAGTACCATTCCAGAAAGACAACTGGGCAAGATAACTCCTCGATAGCAGTTCCGTCAGAGATACTTGCAAATGCCAGATTTATTTCTCAAACAGTGAAGCTAGGGACACAAACTATTCCAACCTGTCGGCAATTTTCAATAGAGGAATTGAAGGAAGCCACAAAAAACTTTGATTTGTCAACTTATATTGGTCAAGGCTCCATGGGGAAGATGTACAAAGGTAAACTGGAGAATGGATCCTATGTGGCAATACGGTCTTTGGCTCTGTCAAAGAAATGCTCAATTCAAACTCTCAGAGCTAAATTGGATTTACTCTCAAAACTTCATCATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGGAGGACAAGATGATTCCAATTCCCATAAACTTCATCTTGTGTATGAGTATGTGCCAAATGGGAATTATCATGCTCATCTCTCAGAATTTTCTGTAGGGAAGGCACTTAAGTGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCAAAGGCAGTGCATTTCTTACATACTGGTGTTATACCTGGCTGCTTTAGTAACCTACTGAAGACAAAAAATGTCTTGCTTGATGAATACTGCATTCCAAAACTAAGTGACTATGGTATGTCCATCATCACAGAAGAAATTGAAAAGTTTGAGGCAAAGGGCGAGAAATCAAAGCCATGGACAAAAGCAGATGATGATGTTTATAATTTTGGATTCATCCTGTTCGAATCACTTGTTGGACCCATAGCATGCGACAGAGGTGAAACATTTTTCCTAAATGAAAAGGCATCGTTTGGGAGTCAAGATGGTAGAAGAAAGATTGTGGATCCGATAGTGTTGACCACTTGCTCTCAAGAGTCTTTATCAATTGCAATATCAATAACAACCAAATGCATTTCTCCAGAATCTTCCCTTCGTCCCTCTTTTGAGGATGTCTTGTGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATGCAGACCACAAATCAGATTAA 2277 0.4058 MFQGGTMRQFCYLYLVVLSWFFFIPNTYELQAAQTQALLQLRVHLEYPSSLQIWQYYQGDLCTLSPSANLSIKCEDDEVTELKITGEKSSKPPRFNGYPVPNHTLSMNFSIDSFFITLTELTTLRVLSLVSLGIWGPLPDKIHSFTLLQVLDLSSNFLFGAIPPKISTMVTLHTLTLDDNYFNTTMPDSFDSLSNLNILSMKSNGLKGSFPSSLGNIKTLEVISLSHNELSGDLPGLSSLTGLHVLDLRENHLESELPLLPKYVVTVLLSNNSFSGEIPKQFQELDQLQHLDLSSNFLSKTPPSALFSLPEISYLNLASNVLSGTLPDKLNCGSKLGFVDISRNKLSGGLPSCLANTSDSRVVRYAGNCLSVDSQNQHRRSYCKESTSGWKSFKTWELAVVMAIVVVLVLVVLVSSVFLWKKYHSRKTTGQDNSSIAVPSEILANARFISQTVKLGTQTIPTCRQFSIEELKEATKNFDLSTYIGQGSMGKMYKGKLENGSYVAIRSLALSKKCSIQTLRAKLDLLSKLHHPNLVSLLGHCIDGGGQDDSNSHKLHLVYEYVPNGNYHAHLSEFSVGKALKWSDRLAILIGVAKAVHFLHTGVIPGCFSNLLKTKNVLLDEYCIPKLSDYGMSIITEEIEKFEAKGEKSKPWTKADDDVYNFGFILFESLVGPIACDRGETFFLNEKASFGSQDGRRKIVDPIVLTTCSQESLSIAISITTKCISPESSLRPSFEDVLWNLQYAAQVQATADADHKSD 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00557 758 Pfam Protein tyrosine and serine/threonine kinase 480 668 IPR001245 GO:0004672|GO:0006468
Vian8g00557 758 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 562 758 - -
Vian8g00557 758 SUPERFAMILY L domain-like 93 371 - -
Vian8g00557 758 ProSiteProfiles Leucine-rich repeat profile. 219 241 IPR001611 GO:0005515
Vian8g00557 758 SUPERFAMILY Protein kinase-like (PK-like) 459 741 IPR011009 -
Vian8g00557 758 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 31 262 - -
Vian8g00557 758 Pfam Leucine rich repeat 266 322 IPR001611 GO:0005515
Vian8g00557 758 Pfam Leucine rich repeat 171 230 IPR001611 GO:0005515
Vian8g00557 758 Gene3D Ribonuclease Inhibitor 31 261 IPR032675 -
Vian8g00557 758 Gene3D Transferase(Phosphotransferase) domain 1 562 758 - -
Vian8g00557 758 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 264 388 - -
Vian8g00557 758 Gene3D Ribonuclease Inhibitor 262 376 IPR032675 -
Vian8g00557 758 ProSiteProfiles Protein kinase domain profile. 478 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00557 758 ProSiteProfiles Leucine-rich repeat profile. 287 308 IPR001611 GO:0005515
Vian8g00557 758 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 108 742 - -
Vian8g00557 758 Gene3D Phosphorylase Kinase; domain 1 450 561 - -
Vian8g00557 758 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 441 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00557 Vian-Chr8 9618362 9622406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00557 7 686 Miscellaneous Gene Families AT5G14210 54.714 0.0 736
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vian8g00557 PK_Tyr_Ser-Thr 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00557 - - gmx:100799183 1255.74