Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00546 ATGGCTGCCTCATCCACCATCAACAACTTCCTCTCTTTCTTCTTACCCACAAAACCTCCGCCACCCTCTACCCCGCCGCCGATCCAATTCAACCCCACCACTTCTTCTCCCTCTCAGAAACCCTCACAACCCCTAATTGCGCAATATGACCCTTCTTCTTCGTCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTCTTGCTCTGAATTGTCCTCTGTGATATGCCCCTCCATGGCGTACACGAACACGCTCTTCTTCCAGTCACCGTACAACGTGCAGGTGGTGGTGGCCCAGGACGAGCCCGAGGAGCGCCTCCTCAACAGGTTCCGCAGAGAGGTGTTGAAGGTCGGCGTCATTCAGGAGTGTAGGCGGAGAAGGTACTTCGAGAACAAACAGGAAGAGAAAAAACGCAAGTCGCGTGAGGCTGCCAAACGTAACCGCAAAAGGCGCCCCATGTCAAAAACTGATGCACAGAAAAAACAGGATGTGCCAGCAACCAAGAGAGAAGATGAGGATAACTGGGATCTACCTGATGGAGATACTCTGTATTAA 552 0.5109 MAASSTINNFLSFFLPTKPPPPSTPPPIQFNPTTSSPSQKPSQPLIAQYDPSSSSSSSSSTTSSSSCSELSSVICPSMAYTNTLFFQSPYNVQVVVAQDEPEERLLNRFRREVLKVGVIQECRRRRYFENKQEEKKRKSREAAKRNRKRRPMSKTDAQKKQDVPATKREDEDNWDLPDGDTLY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00546 183 MobiDBLite consensus disorder prediction 13 65 - -
Vian8g00546 183 Hamap 30S ribosomal protein S21 [rpsU]. 91 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 MobiDBLite consensus disorder prediction 33 65 - -
Vian8g00546 183 NCBIfam 30S ribosomal protein S21 92 149 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 MobiDBLite consensus disorder prediction 130 183 - -
Vian8g00546 183 PRINTS Ribosomal protein S21 family signature 115 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 PRINTS Ribosomal protein S21 family signature 95 103 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 PRINTS Ribosomal protein S21 family signature 103 112 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 PRINTS Ribosomal protein S21 family signature 127 137 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 MobiDBLite consensus disorder prediction 155 174 - -
Vian8g00546 183 MobiDBLite consensus disorder prediction 15 32 - -
Vian8g00546 183 Pfam Ribosomal protein S21 93 147 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 182 IPR001911 GO:0003735|GO:0005840|GO:0006412
Vian8g00546 183 Gene3D Ribosomal protein S8 106 144 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00546 Vian-Chr8 9464451 9466570 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00546 - - vra:106765493 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01505 2 31141875 31143899 Vian8g00546 8 9464451 9466570 PCT
Vian2g01550 2 32154148 32156707 Vian8g00546 8 9464451 9466570 PCT