Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00532 ATGTGGTCAGTTTACCTCTGGAGAAACGTCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATATCCTCAACCCGCCGCACCGTGACCTCATCGCGCAGGCGCACAACGGGTTTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGTCCCACTCAGGCGTTGGCTAATCAGAACATCGAGGTTCTCTTCAAGATGGGGAAGTACACCGGGATTGCGTCGGAGTGCGCTGTGCCCACAGATAGCAATGCGCTCTCGATTGCGAAAAGGGCGCCGAGTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTCGCGGAGAAAATTGATTGGTCTTGGGTGTACCCCCAAGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATTATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGTGGCAGCCGCCAATTTGGCAGTCGCAGCCGGACCACTGGCAGAGGCCGGACTGGCAGAGGCCGGACTGGCAGAGGCCCGAAATGCGGATGAGGCCCGAAATGCGGATGAGGCCCGAAGCGCCGATGAGGCCCGAAGCGCCGATGAGGCCCGAAGCTCCGATGAGGCCCGAAGCTCCGATGAGGCCGCAATCGTAGATGCGACCTAA 1110 0.5144 MWSVYLWRNVVHVGCEVRGLKPLAGASERALRGDEVPEAEQDPGDKFADILNPPHRDLIAQAHNGFGKTTCFVLGMLSRVDPKVQAPQALCVCPTQALANQNIEVLFKMGKYTGIASECAVPTDSNALSIAKRAPSMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAEKIDWSWVYPQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDVAAANLAVAAGPLAEAGLAEAGLAEARNADEARNADEARSADEARSADEARSSDEARSSDEAAIVDAT 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00532 369 Pfam DEAD/DEAH box helicase 55 200 IPR011545 GO:0003676|GO:0005524
Vian8g00532 369 Gene3D - 46 220 IPR027417 -
Vian8g00532 369 MobiDBLite consensus disorder prediction 326 369 - -
Vian8g00532 369 MobiDBLite consensus disorder prediction 327 362 - -
Vian8g00532 369 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 55 302 - -
Vian8g00532 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 206 IPR027417 -
Vian8g00532 369 Gene3D - 221 318 IPR027417 -
Vian8g00532 369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 301 IPR027417 -
Vian8g00532 369 SMART ultradead3 27 228 IPR014001 -
Vian8g00532 369 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 212 IPR014001 -
Vian8g00532 369 Pfam Helicase conserved C-terminal domain 238 301 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00532 Vian-Chr8 9060502 9067627 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00532 57 300 Eukaryotic Initiation Factors Gene Family AT1G72730 30.469 3.22e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00532 K18655 - gmx:100784739 394.43