Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00531 ATGGTTCGAGGTCTAATGCTTACTCTGAAATACTTCTTTGAAACAAAAATTACATCCATCTGGATCTCAGGGAGAGGGATACAAAAGAAATCTGATGAAGCAAAATTGATATTTGCTGCTGCCAAGATGCACAAAGGTCAACTAAAGGATGGTTTACTTGTTGCCATTAGAAGTGTAAAAATCACCAAAAGCTTCAGCACTCAAGATTTTGTGCATAACATAGAGCAGATATTCAAATACAGACATCGTCATTTAGTCAGTGTTCTTGGACACTTCTTTGAATGTTATTTGGACGATTCAAGTGTCAGCAGCATATTTATTGTGTTTGAGTATGTTCCTAATGGCACACTCAAGAGCTGGATTTCAGGTGATTCATAA 378 0.3677 MVRGLMLTLKYFFETKITSIWISGRGIQKKSDEAKLIFAAAKMHKGQLKDGLLVAIRSVKITKSFSTQDFVHNIEQIFKYRHRHLVSVLGHFFECYLDDSSVSSIFIVFEYVPNGTLKSWISGDS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00531 125 Gene3D Transferase(Phosphotransferase) domain 1 39 125 - -
Vian8g00531 125 Pfam Protein tyrosine and serine/threonine kinase 43 121 IPR001245 GO:0004672|GO:0006468
Vian8g00531 125 SUPERFAMILY Protein kinase-like (PK-like) 42 123 IPR011009 -
Vian8g00531 125 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 42 123 IPR047117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00531 Vian-Chr8 9049973 9057250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00531 39 122 Miscellaneous Gene Families AT3G03770 64.286 6.18e-34 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vian8g00531 PK_Tyr_Ser-Thr 6.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00531 - - var:108343834 196.438