Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00528 ATGGGTCATGTTGGAGGAACAGAAACTGAATGTTCTGACATGCCCTTTAAGAATTTGAACTCCTCACTGATCCAACACCAGGAGAAAGAAGAAGAATGTTTTGGGATTCAGAATAAGGACTTGTCTTTGAGACCTGGTGAAGAACTTGAAGCTAAGGGTTCTTCATTCACAGAGAAAATTAGACAGACCAAGCTTTGTGCAAGAGGACATTGGAGGCCAGTTGAAGATGCCAAACTTAAAGAGCTTGTTGCACAATTGGGACCTCAAAATTGGAACTCCATAGCAGAACATCTTCCTGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGCTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAGAGACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCATGATTTCTAGACTCTTCCCTGGTAGGACTGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCAAGGAGGCAAAGGGAAAAGTCATGTGTCTTCAGAAGGAGAAAACCCACATTTCAGATCCTTCCACCAAAGGATTTGGATTTGATCTTGCCAGTGAATGGAGGCAGTGAATCAACCATTTCCAGCACCATCATTGATGAATCTGCCTCAACAGAAACTAACCTCTCCTTCACACCCTCTCTAGCCAAACCAACTCCTCTGCCTTTCCTAAACCATTGTCATGTTCAGAATCTGCAAACTTTTGGTGGTTCTCTAATGGGTTTATCTGGAGAAAGCAGAAAAGCACTGAGAGAAGTGAGTTTTGGCATGTATTTTGGTGGTTGGAGGGATTCATTTCAGGTTGGACACATGGAAAGGCTAATGGGTGTGGATCAATCTAATTATTCAGAGTCAAACTCATCAGAAGTTTCGATATCTGAGTCAGTTGCCACCAACAACACTACCAATCTCTCAATTTCTGGGGAAAATGAAAGCATGGGTAATAACAAGGCCAACAAAATGATATTCATTGACTTTCTTGGAGTAGGAGCTGCATAA 1032 0.4196 MGHVGGTETECSDMPFKNLNSSLIQHQEKEEECFGIQNKDLSLRPGEELEAKGSSFTEKIRQTKLCARGHWRPVEDAKLKELVAQLGPQNWNSIAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEERLLNAHKVYGNKWAMISRLFPGRTDNAVKNHWHVIMARRQREKSCVFRRRKPTFQILPPKDLDLILPVNGGSESTISSTIIDESASTETNLSFTPSLAKPTPLPFLNHCHVQNLQTFGGSLMGLSGESRKALREVSFGMYFGGWRDSFQVGHMERLMGVDQSNYSESNSSEVSISESVATNNTTNLSISGENESMGNNKANKMIFIDFLGVGAA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00528 343 ProSiteProfiles Myb-like domain profile. 115 165 IPR001005 -
Vian8g00528 343 Pfam Myb-like DNA-binding domain 68 114 IPR001005 -
Vian8g00528 343 Pfam Myb-like DNA-binding domain 120 163 IPR001005 -
Vian8g00528 343 ProSiteProfiles Myb-like domain profile. 68 114 IPR001005 -
Vian8g00528 343 PANTHER MYB PROTEIN-RELATED 68 292 - -
Vian8g00528 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 114 IPR017930 -
Vian8g00528 343 CDD SANT 122 162 IPR001005 -
Vian8g00528 343 FunFam MYB transcription factor 68 119 - -
Vian8g00528 343 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 169 IPR017930 -
Vian8g00528 343 CDD SANT 71 112 IPR001005 -
Vian8g00528 343 Gene3D - 68 119 - -
Vian8g00528 343 Gene3D - 121 180 - -
Vian8g00528 343 SMART sant 119 167 IPR001005 -
Vian8g00528 343 SMART sant 67 116 IPR001005 -
Vian8g00528 343 SUPERFAMILY Homeodomain-like 68 161 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00528 Vian-Chr8 8977301 8978629 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00528 63 237 MYB Transcription Factor Family AT5G17800 58.757 4.53e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00528 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00528 K09422 - gmx:100791795 319.701