Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00527 ATGGTAGACGTAAATTCAATAATGTGCTTTTCTGCATCTTCAGTTTCAATGAGCGCTGAAATGAATGTTTTTCCTTCACCTCCTGTTGCTGTTATTGGTCTCCAGTGTTTCAACATTATAGGGGTGATGGGTCATGTTGGAGACATGAAATCTGAAAGTTCTGATATACCTTTTCAGATTTTGAATCCCAAAAGCGTGGAGGAAGAAGAATCTTCTGGGGTTGAAGCCACTGGCTTGTCTTTGAAACCTGGTGAAGAGCTTCAAGCTAATAGTTATCCTGCTAAAGGGAAAATCAGACACACTAAGCTTTGTGCAAGAGGACATTGGAGATCAGCTGAAGATGCCAAACTTAAAGAGTTTGTTGCACAATTTGGACCTCAAAATTGGAACTCAATGGCAGAACATCTTCCAGGAAGATCAGGAAAAAGTTGCAGATTGAGGTGGTTTAATCAGTTAGATCCTAGAATTAACAGAAAGGCTTTCAGTGAGGAAGAAGAGGAAAAACTCTTGAATGCTCACAAAGTGTATGGTAACAAATGGGCCACGATTTCTAGACTCTTCCCAGCAAAATCAACTCCTCTGCCTTTTCTAAACCATTGTCAAGTTCAGAATGTCCAAACCTTTGGTGGTGCTCTAATGGGTTTATCTGGGGAAAGCAGGACACCAGACAGGGATGTGAGTTTCAACAAGCATTTTGGTGCTGGGAAAGGTTCATCTGAGACTGGACACATGGGAAGGGTAATGGGTGTGGACCAATCTCATTACTCAGATTCAAACTCATCAGAAGTTTCAGAATCAGTTGCCACCAACAAGACTACCAATTTATCAATGTATGGGGAAAGTGATAACAGCGCCAACATGTTATTCATTGATTTTCTTGGAGTAGGAACTACATAA 897 0.4091 MVDVNSIMCFSASSVSMSAEMNVFPSPPVAVIGLQCFNIIGVMGHVGDMKSESSDIPFQILNPKSVEEEESSGVEATGLSLKPGEELQANSYPAKGKIRHTKLCARGHWRSAEDAKLKEFVAQFGPQNWNSMAEHLPGRSGKSCRLRWFNQLDPRINRKAFSEEEEEKLLNAHKVYGNKWATISRLFPAKSTPLPFLNHCQVQNVQTFGGALMGLSGESRTPDRDVSFNKHFGAGKGSSETGHMGRVMGVDQSHYSDSNSSEVSESVATNKTTNLSMYGESDNSANMLFIDFLGVGTT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00527 298 Gene3D - 160 204 - -
Vian8g00527 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 156 IPR017930 -
Vian8g00527 298 ProSiteProfiles Myb-like domain profile. 106 152 IPR001005 -
Vian8g00527 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 157 188 IPR017930 -
Vian8g00527 298 Pfam Myb-like DNA-binding domain 109 169 - -
Vian8g00527 298 Gene3D - 106 157 - -
Vian8g00527 298 SUPERFAMILY Homeodomain-like 106 191 IPR009057 -
Vian8g00527 298 MobiDBLite consensus disorder prediction 252 268 - -
Vian8g00527 298 ProSiteProfiles Myb-like domain profile. 153 191 IPR001005 -
Vian8g00527 298 SMART sant 105 154 IPR001005 -
Vian8g00527 298 SMART sant 157 195 IPR001005 -
Vian8g00527 298 CDD SANT 109 150 IPR001005 -
Vian8g00527 298 MobiDBLite consensus disorder prediction 232 268 - -
Vian8g00527 298 FunFam MYB transcription factor 106 157 - -
Vian8g00527 298 PANTHER MYB PROTEIN-RELATED 106 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00527 Vian-Chr8 8920288 8928992 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00527 101 191 MYB Transcription Factor Family AT5G17800 75.824 2.54e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00527 Myb_DNA-bind_6 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00527 K09422 - pvy:116136061 197.593