Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00518 ATGGGAAGCAGAAAGGAAGAAGAGAAGAATGAGAAAATTATCAGAGGTCTCATGAAGCTTCCCCCAAATCGAAGATGTATCAACTGCAACAGCTTGGGACCACAATATGTATGTACAAGTTTTTGGACTTTCATTTGCATGACATGCAGTGGAATACATCGTGAGTTTACTCATCGTGTGAAGTCTGTCTCAATGGCAAAGTTCACTTCGCAAGAAGTCGATGCTCTTCAAATTGGGGGTAACCAGCGTGCAAGGGAAATATACTTGAAAAATTGGGACTTCCAAAGGCAGCGGTTGCCAGATAACAGCAATGTTGATAAAGTAAGGGAATTTATAAAGAGTGTATATGTGGATGGAAGATATGCTGCAAGCCCTGGAATTCATGAAGATGAGGTTAGGCGTGCCAGTTCTTATCATTCATTTTCTCAAAGTCCTCCATATGATTATCAGTATGAGGATCGGAAGTATGGAAAACAAGCAGCTGCACTCACCAGGAAGCCTGGTTCAGATAAAGCTCGATATGAAGGGAAAATATCTAGTATTATCTACAGTCCTGGCCGCTTCAGTGATCATGCATATGATGACAGATTTGCAAATGAAGGATCTGGTCCAAGAATTTCTGACTTTTCTGTTTTTAGTGGTGGCGAACAATTCAAATCTGATGTTCAGTCTCCCAATTCCTATAAAGATATTAAGATTAGCAGTCCATCCTATCAAAGGCGCTCTGGTTCCAGTTCGAGTGAAGATGTGTGGTACCACGCAAGAAATGCATCTCTGGAAAATAATGTCAATGCCAAGAGAGATGGAAATGGATTTCGTCCTCCACAGATAACTGCATCAGAACAATCAGGAGACAACAAAATTTCATCCTTGAGATCTTATAATTCTGGCAGTTTAGTTGATTTTTTCTCTGAACCAGTTCAACCTTCAGAACCACTTCAGAATAAAGCATTTGGCATCCCACGACCACCTGGTCCTACAAGATCTGTTAGCATGGACCTCTCCAAGGCACCATTTGAATCAGCAGCAGCGGCATCTCAAGCTCCAACAGTGGATCTGTTTCAATCATCCTTTTCATCTGCAGTTCCATTTTTCAATGACAATCAACTTCCTCAAGCATCCCAACCTGCATCCATTGAATTTTTTGCGGATCTCTCTGAGAAGCCTTCCACTGTAAACTCAAATGAAAAGGCACTGGATTTATCTGTCCCTAAAAATGAAGGATGGGCAACTTTTGACATGCCTCAGAGCACCTCATCCACTGCACAAATGGAAATTCCAGCTACTGTACCCTTAAGTGCTAAATCTTTACAAGAAAGATTTGATCCGTTTTCCACTTCAAATGCAAACACACAATGGCCATCTTTTGAATTTTCAAGTGGCAGTATACATTCTTCACTTACATCTAATTTATGGAATGATGGTGTGTGGAATAGTGAAGAACAAGTTTCCGCTATATCAGCAAACACTCAACCATGGAATGCATTTGAAGATTCTGGTGGCCATCATCCTGTGGATGCCCTAAGTCAAGGATTACAATTGCACAATTTTCCCTCAGCTGATAATCAAATTTTGGGATTAAGAGAGTCTGAGGGGTCCAAAAGTGATGGCGTTAAAGGCATTGTCCCGGTTGATGCATTTGAAAATCATGACATCCCATCGCATGTCAATGATTCAGAATATCCACCATCCATGCTTCCTTCAATGGGAGACATTGAACCTATTGGAACGAAATGTAAATCAACTAATCCATTTGATTTTCCTGATGAATCTGATGTAGCTCACAACAATATGTTTCTTGATATGAGCTCTTTGCAAGATGCACTGCCAGATTCCCTGTTTCCAACCTCCTTCCATAATGGTATAGCTGAATCTTGGCTTCCCCAAAACACGGTGACCCCTTTTATTTCCTCTTCTGGAGAAGGTGGTTTGTCATTCATGGCTGTGCAATCACCAGGTTCTCAAATACAGTAA 1974 0.4108 MGSRKEEEKNEKIIRGLMKLPPNRRCINCNSLGPQYVCTSFWTFICMTCSGIHREFTHRVKSVSMAKFTSQEVDALQIGGNQRAREIYLKNWDFQRQRLPDNSNVDKVREFIKSVYVDGRYAASPGIHEDEVRRASSYHSFSQSPPYDYQYEDRKYGKQAAALTRKPGSDKARYEGKISSIIYSPGRFSDHAYDDRFANEGSGPRISDFSVFSGGEQFKSDVQSPNSYKDIKISSPSYQRRSGSSSSEDVWYHARNASLENNVNAKRDGNGFRPPQITASEQSGDNKISSLRSYNSGSLVDFFSEPVQPSEPLQNKAFGIPRPPGPTRSVSMDLSKAPFESAAAASQAPTVDLFQSSFSSAVPFFNDNQLPQASQPASIEFFADLSEKPSTVNSNEKALDLSVPKNEGWATFDMPQSTSSTAQMEIPATVPLSAKSLQERFDPFSTSNANTQWPSFEFSSGSIHSSLTSNLWNDGVWNSEEQVSAISANTQPWNAFEDSGGHHPVDALSQGLQLHNFPSADNQILGLRESEGSKSDGVKGIVPVDAFENHDIPSHVNDSEYPPSMLPSMGDIEPIGTKCKSTNPFDFPDESDVAHNNMFLDMSSLQDALPDSLFPTSFHNGIAESWLPQNTVTPFISSSGEGGLSFMAVQSPGSQIQ 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00518 657 SMART arf_gap_3 11 127 IPR001164 GO:0005096
Vian8g00518 657 MobiDBLite consensus disorder prediction 262 288 - -
Vian8g00518 657 Pfam Putative GTPase activating protein for Arf 12 123 IPR001164 GO:0005096
Vian8g00518 657 ProSiteProfiles ARF GTPase-activating proteins domain profile. 11 134 IPR001164 GO:0005096
Vian8g00518 657 SUPERFAMILY ArfGap/RecO-like zinc finger 10 123 IPR037278 -
Vian8g00518 657 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Vian8g00518 657 CDD ArfGap_AGFG 11 123 - -
Vian8g00518 657 PRINTS HIV Rev interacting protein signature 60 81 IPR001164 GO:0005096
Vian8g00518 657 PRINTS HIV Rev interacting protein signature 23 42 IPR001164 GO:0005096
Vian8g00518 657 PRINTS HIV Rev interacting protein signature 42 59 IPR001164 GO:0005096
Vian8g00518 657 PANTHER ARFGAP/RECO-RELATED 1 656 IPR044820 GO:0005096
Vian8g00518 657 MobiDBLite consensus disorder prediction 218 246 - -
Vian8g00518 657 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00518 Vian-Chr8 8780437 8786013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00518 14 116 C2H2 Transcription Factor Family AT4G05330 34.211 2.69e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00518 K15044 - gmx:100788316 1046.19