Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00513 ATGGACAGGCTCATAAAGTTAGAGCCTTCAAACACAGTCGTAATCAGAGTAGAACCAGGCCAAAAGTGCCAAGGCAAAATCACCTTACACAACGTCATGCACACAATGCCAGTGGCCTTCAGGCTTCAACCCCTCATCAAAACTCGTTACGTAGTTAAGCCCCACTCAGGTATTATCTCCCCCTTAGCCACGCTCACTGTAGAAATCACCTATCACACACCCTCCACCACCACCCTCCCCCATTCCTTCCCTCACTCCAACGACTCCTTCCTCCTACACAGTGTCTTGGTTCCAGGAGCCGCCATCAGAGAACCCTCCTCCATGTTCGACGCTGTTCCCTCCGACTGGTTTAAGAAAAAACAAGTCTTCGTCGACAGCGGCATAAGGGTCATGTTTTTAGGGTCACACATTCTGGCCCACTTGGTCTCGCTCGGCGAAATCGATGAGGTGAGGGAAGCTCTGGAGAGAAGCGACCCTTCATGGGGAATTGTAAACAGCACCGACCCACATGGCCAGACATTGCTCCACTTGGCGGTCGCACAGGGAAGAGCTGACCTCGTTCAGCTGCTTCTGGAGTTCGAGGCCGATACCGAGGCAACAAACCGTTCTGGGTTGACCCCACTTGAGGCTGCAGCATCGTGTAACGAAACATTGATCGTGGAGCTTCTTCTGGCTCGCAGGGCCAACACGGAGCGAGCTGAAATGGCCGTGTTTGGGCCGATTCATCACGCGGCTAGAGGAGGACACGTGGAGGTCCTAAGACTGCTCTTGCTCAAAGACGCCAAAGTGGACTCGCTCACGAAAGACGGCAACACTGCTTTGCACGTTGCAGTTGAGGAGCGTCGAAGAGACTGTGTTAGACTTCTTCTAGCCAACGGTGCCAGAACTGACCTTAAGAACGCAAGAGAAGGTGACACCCCTTTGCACACGGCAGCAGCAGCAGGAGACGAGAGCATGGTGAAGCTCCTGCTGCAAAAGGGCAATGCCAACAAGGACGTTCGAAACGCACAAGGAAAAACCGCCTACGACGTCGCGGTGGAGAACGGCCACGAGCGCCTCTTTGACGCCCTGAGTCTGGGCGACAAGCTGTGCACGGCTGCAAAGAAAGGCGAAGTGAGAACCATCCAGAAGCTTCTGGAGAACGGCGCGGACCTTAACGGGAGGGACCAGCACGGTTGGACCGCGCTGCACCGGGCCTCGTTCAAAGGGCGAATCGACGTGGTGAAGGTTCTGGTGGAGAGAGGGGTGGAGGTGGACGCGAAGGACGAAGAAGGGTACACGGCACTGCACTGTGCGGCGGAGGCGGGGCACGCAGACGTGACGGAGTTTTTGGTGAAGAAAGGTGCGGACGTTGAGGCGAGGACTAGGAAGGGCGTGAGCGCGTTGCAGATAACAGAGTCGTTGAACTACGTGGGGATCACGAGGGTTCTTGTTAACGGTGGGGCTAGTAGGGAAAATTCTGATAGAGTCGCTGCGTTTGGTGCAATTGCTTTTGGGAGTAAGATAATGGAAGGTGGGGGTGTTGTTAAGAAGAGGAGGGGTGGTGACAGAGGTAATATCAGAGGGTTGAATAATGGTGCTGGTTTTGGTCGCTCATTGGCTCTGGCTGTGCTCTAA 1617 0.5479 MDRLIKLEPSNTVVIRVEPGQKCQGKITLHNVMHTMPVAFRLQPLIKTRYVVKPHSGIISPLATLTVEITYHTPSTTTLPHSFPHSNDSFLLHSVLVPGAAIREPSSMFDAVPSDWFKKKQVFVDSGIRVMFLGSHILAHLVSLGEIDEVREALERSDPSWGIVNSTDPHGQTLLHLAVAQGRADLVQLLLEFEADTEATNRSGLTPLEAAASCNETLIVELLLARRANTERAEMAVFGPIHHAARGGHVEVLRLLLLKDAKVDSLTKDGNTALHVAVEERRRDCVRLLLANGARTDLKNAREGDTPLHTAAAAGDESMVKLLLQKGNANKDVRNAQGKTAYDVAVENGHERLFDALSLGDKLCTAAKKGEVRTIQKLLENGADLNGRDQHGWTALHRASFKGRIDVVKVLVERGVEVDAKDEEGYTALHCAAEAGHADVTEFLVKKGADVEARTRKGVSALQITESLNYVGITRVLVNGGASRENSDRVAAFGAIAFGSKIMEGGGVVKKRRGGDRGNIRGLNNGAGFGRSLALAVL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 269 301 IPR002110 GO:0005515
Vian8g00513 538 PANTHER MOLTING PROTEIN MLT-4 118 413 - -
Vian8g00513 538 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 133 IPR000535 -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 391 423 IPR002110 GO:0005515
Vian8g00513 538 Gene3D - 130 237 IPR036770 -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 269 300 - -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 303 327 IPR002110 GO:0005515
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 170 202 IPR002110 GO:0005515
Vian8g00513 538 Pfam Ankyrin repeats (3 copies) 364 454 IPR002110 GO:0005515
Vian8g00513 538 Pfam Ankyrin repeats (3 copies) 300 358 IPR002110 GO:0005515
Vian8g00513 538 Pfam Ankyrin repeats (3 copies) 240 299 IPR002110 GO:0005515
Vian8g00513 538 Gene3D - 274 302 IPR036770 -
Vian8g00513 538 Gene3D - 303 357 IPR036770 -
Vian8g00513 538 Gene3D Immunoglobulins 1 129 IPR013783 -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 240 264 - -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 424 456 IPR002110 GO:0005515
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 170 202 - -
Vian8g00513 538 SUPERFAMILY Ankyrin repeat 164 487 IPR036770 -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 203 235 IPR002110 GO:0005515
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 391 423 - -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 363 390 IPR002110 GO:0005515
Vian8g00513 538 SUPERFAMILY PapD-like 2 140 IPR008962 -
Vian8g00513 538 SMART ANK_2a 391 420 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 424 453 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 457 486 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 269 298 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 236 265 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 303 333 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 203 232 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 170 199 IPR002110 GO:0005515
Vian8g00513 538 SMART ANK_2a 337 387 IPR002110 GO:0005515
Vian8g00513 538 Pfam Ankyrin repeats (many copies) 164 209 IPR002110 GO:0005515
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 424 456 - -
Vian8g00513 538 Gene3D - 358 491 IPR036770 -
Vian8g00513 538 ProSiteProfiles Ankyrin repeat region circular profile. 303 327 - -
Vian8g00513 538 Pfam MSP (Major sperm protein) domain 5 108 IPR000535 -
Vian8g00513 538 PRINTS Ankyrin repeat signature 304 319 IPR002110 GO:0005515
Vian8g00513 538 PRINTS Ankyrin repeat signature 440 454 IPR002110 GO:0005515
Vian8g00513 538 ProSiteProfiles Ankyrin repeat profile. 240 268 IPR002110 GO:0005515
Vian8g00513 538 Gene3D - 238 273 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00513 Vian-Chr8 8691830 8693528 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00513 357 467 Ion Channels AT4G32500 31.532 5.02e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00513 - - gmx:100782444 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g01686 2 34573263 34574831 Vian8g00513 8 8691830 8693528 PCT