Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00509 ATGGATCACTACAAGGTTCTCGGCTTGCACCGAACCGCGACCAAGGAGGAAATCAAAACCGCTTTCAAGAAACTAGCGTTTCAGTTTCACCCGGACAAGCATTCTCAATCGCCGAGGGCCATTAGGGAAAATGCCACAATTCGATTCAAGCAGGTATCGGAGGCCTACGAGGTCCTTATGGATGACCGAAAGCGAGCCGACTACAATTTCCGGCGGAGCTCGGGCAATCACGGCGGAAACAACCACTATTCTCATTACAGCTACGGATACAGTAGGAGCGGGAGCAGGTACGACTACAAACCTGGGTCTGGTGCTGGTGGTGGCTTAGCTTCCAATTTTGAAATGGCTCTTCGAATTTTGACGGGGCGGTCTTCACTTCTCTATCTTGGCTTCGCAGGGGCTATATTATGTGGGATAGTTGTCATTGATGCAAGCCGAGAATCCTTATGGAGAATGCAAAATTCTGGGAAATCTTTTGAAGAAGCCATGAAGTCCATTGAGAAAGCCAAAGCGTATAGAGAAGATAACATGAAGTAA 537 0.4804 MDHYKVLGLHRTATKEEIKTAFKKLAFQFHPDKHSQSPRAIRENATIRFKQVSEAYEVLMDDRKRADYNFRRSSGNHGGNNHYSHYSYGYSRSGSRYDYKPGSGAGGGLASNFEMALRILTGRSSLLYLGFAGAILCGIVVIDASRESLWRMQNSGKSFEEAMKSIEKAKAYREDNMK 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00509 178 Gene3D DnaJ domain 1 118 IPR036869 -
Vian8g00509 178 Pfam DnaJ domain 2 69 IPR001623 -
Vian8g00509 178 CDD DnaJ 2 61 IPR001623 -
Vian8g00509 178 ProSiteProfiles dnaJ domain profile. 2 72 IPR001623 -
Vian8g00509 178 ProSitePatterns Nt-dnaJ domain signature. 49 68 IPR018253 -
Vian8g00509 178 SUPERFAMILY Chaperone J-domain 1 92 IPR036869 -
Vian8g00509 178 FunFam DnaJ domain protein 1 90 - -
Vian8g00509 178 SMART dnaj_3 1 64 IPR001623 -
Vian8g00509 178 PANTHER CO-CHAPERONE PROTEIN DJLA 4 101 - -
Vian8g00509 178 PRINTS DnaJ domain signature 44 64 IPR001623 -
Vian8g00509 178 PRINTS DnaJ domain signature 22 37 IPR001623 -
Vian8g00509 178 PRINTS DnaJ domain signature 4 22 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00509 Vian-Chr8 8607977 8612132 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00509 3 73 C2H2 Transcription Factor Family AT1G74250 39.437 1.53e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00509 - - var:108343742 317.775