Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00492 ATGCTGAAGAAGTCTAATTCCTACAACAAAGAAAGAAGTAGGCTTGTGATAGAGGAGGTGAAGGCAAAAGTGGTGGTGGAGGAGAAAAGAGTGATGTTCTTGGTTGGAATTGTGAGGTGGTTGGAGACGAATCACGTCGAAGAAGTTGCAAATTCTCCGGTTCAAGGAATGGAAAGCGTGGTGGCAACGGTTAGCGGTTACCACGGCTCCGAGCGGTTCGATCTCATCAAGCTGATTTCACATGCCGGCGCCAATTACGTTGGCACAATGTCAAAATCGATAACGCATTTGGTGTGCTGGAAATTTGAAGGAAAGAAATACGATATTGCGTTGAAGTTTAGAATACCTGTAGTAAACCACCAATGGATTGAGGATTGCATAAAGGAAGGGAGGCGTGTTCCAGAAGATTCTTATACCTTGCAGAGTGGACATGAAGTAGGGCGATTGTTACTGGAAGTTCCCGTCACTGTTCGGACCAGTAGGTTGACACAGAAAAAAATCGTCAGTGACAAGTTACATGATACAGGGACTGAAAGGCAAAAACCTAACTTCGGTTCTGGAATTTCAATAGCTTATGTTTTGGAAGATTCTTGTTTAATGAAAAAGCATGATGAATCAACTTCATATTCGTCTAGACTGTCAAAGAAAGGAAAAAGGAACATTTGTAACGGTAAGGGAGTGATTACTCTAGCTGGACCTTCTCGTAAAGGAAGAAGACTTACGAGAAATCTTGATGATGTGGTGTTGGCTCCTTCAATTTTGGATTTAAGCTCAGATGACCACCTTTTTAAAGCGGATAGACTACAAACAGACGCTAAAGCGACATCTAGCCTTTCTGGTGGTCTCAATAATAACACTATTCTACAAAATAGTGAAGGACCTAATGCTGGATTAAGTACTGAAAATAGAATTATCGATGGTGGTTCAGATGATATTGAACAGATCAAAGATTCAGTTCCTATATCAACGCTTAGAAATTCAACTTTGTTTGTAGAAGATGCCCTACGTGTGCCACAAACATCAATAGATTTATGTTCTAGTGATGAGGAAAAATTCACCGATGGTGATCAGGTTGATAATGGTGCTGGCTTACCTACTTCAACAGAGATGTCATGTGTTATATGTTTCACAGATTTCAGCACAACACGGGGGATTCTGCCATGTGGACATCGATTTTGTTTTCCATGCATCCAGAGTTGGGTTGATCATAGGTCTACACAGACGGGAGCTTGTGTAATTTGCCGTGGTCGGGAACCAGAGGATCTCCTTGAGAATTGTGATATTTGCCAAATTCAAAAAATTCATTCTTATTGCATGGACCCTCCTCTACGGCCATGGACATGCAATCATTGCAAGGAACTTCGGATGCTTTATCGCACTAATCACTATTAG 1392 0.4145 MLKKSNSYNKERSRLVIEEVKAKVVVEEKRVMFLVGIVRWLETNHVEEVANSPVQGMESVVATVSGYHGSERFDLIKLISHAGANYVGTMSKSITHLVCWKFEGKKYDIALKFRIPVVNHQWIEDCIKEGRRVPEDSYTLQSGHEVGRLLLEVPVTVRTSRLTQKKIVSDKLHDTGTERQKPNFGSGISIAYVLEDSCLMKKHDESTSYSSRLSKKGKRNICNGKGVITLAGPSRKGRRLTRNLDDVVLAPSILDLSSDDHLFKADRLQTDAKATSSLSGGLNNNTILQNSEGPNAGLSTENRIIDGGSDDIEQIKDSVPISTLRNSTLFVEDALRVPQTSIDLCSSDEEKFTDGDQVDNGAGLPTSTEMSCVICFTDFSTTRGILPCGHRFCFPCIQSWVDHRSTQTGACVICRGREPEDLLENCDICQIQKIHSYCMDPPLRPWTCNHCKELRMLYRTNHY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00492 463 PANTHER F5A8.9 PROTEIN 407 460 - -
Vian8g00492 463 ProSiteProfiles BRCT domain profile. 49 140 IPR001357 -
Vian8g00492 463 MobiDBLite consensus disorder prediction 274 300 - -
Vian8g00492 463 SUPERFAMILY FYVE/PHD zinc finger 400 454 IPR011011 -
Vian8g00492 463 Pfam Ring finger domain 371 415 IPR001841 -
Vian8g00492 463 Pfam twin BRCT domain 60 122 IPR001357 -
Vian8g00492 463 MobiDBLite consensus disorder prediction 274 298 - -
Vian8g00492 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 423 IPR013083 -
Vian8g00492 463 SMART ring_2 372 414 IPR001841 -
Vian8g00492 463 SUPERFAMILY RING/U-box 371 417 - -
Vian8g00492 463 ProSitePatterns Zinc finger RING-type signature. 388 397 IPR017907 -
Vian8g00492 463 Gene3D BRCT domain 53 139 IPR036420 -
Vian8g00492 463 ProSiteProfiles Zinc finger RING-type profile. 372 415 IPR001841 -
Vian8g00492 463 SMART BRCT_7 54 130 IPR001357 -
Vian8g00492 463 SUPERFAMILY BRCT domain 38 141 IPR036420 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00492 94 146 Core DNA Replication Machinery Family AT4G02110 50.000 1.13e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00492 - - gmx:100815034 606.29