Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00476 ATGGCAACTCTAAGTTCCCGTAGATTCACGTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACGCGTTATGGTTTCACCGGTAATCTATACAGAGCTCTCTGTGACAGGGGACTTCACACTTTCATCGATGATGACAAACTTCAAAGCGGAGACGAAATCACACCAGCACTTCTGAAAGCAATTGAAGAGTCTAGGATTGCCATCGTTGTACTCTCTCACAACTATGCTTCTTCCTCCTTATGCTTGGATGAACTCACAACAATCCTTCACTGCCAAAGTGAAGGGCTGTTGGTTATACCAGTGTTTTATAAGGTGGATCCTTCTTATGTCAGACACCAGAAAGGTACCTACGAAGAAGCATTGGCTAAGCATCAAAAGAGGTTCAAAGCGCAGAAGGAGAAGTTACAGAAATGGAAGATTGCTCTGCGTCAAGTTGCTGACTTCTCTGGCTATCACTTCAAAGATGGGCATGAATACCAGTACGAGTTTACTGAGAGAATTGTTGAACGGGTTTCCAGGGAGATTAATCGTGCTCCTTTACATGTTGCGGATTACCCAGTTGGCCTACTGTCACAGGTGCTGCAAGTCAAGAAACTTTTGGATGTTGGATCGGATGATGTTGTCCACATGATAGGGATCCATGGAATGGGTGGGTTAGGAAAAACAACACTTTCTCTAGCAGTTTATAATTTGATTGCTGATGATTTTGATAGTTCATGTTTTCTTCAAAATGTAAGAGAAGAATCAAATAAACATGGGTTAAAACACCTCCAGACCGTCCTTCTTTCTGAACTACTTGGAGAGAAGGACATCAACTTAGCAAGTGTGCAAAGAGGAATTTCAGTGATACAACAAAGGCTTGGTAGAAAGAAAGTTCTCTTGATTCTAGACGATGTTGACAACAGAAAGCAGTTACAGGCATTTGCTGGAAGATCTGATTGGTTTGCTCCCGGCAGCAGAGTTATCGTTACCACTCGGGACGAACAGCTGCTAAAATGTCATGAGATTGAAAGAACTTATGAGGTGAAGGAATTGAAAAAGAATGATTCTCTTCAATTGCTTATATGGAATGCTTTCAAAAGGGAAAAGGTCGATCCAAGTTACGAGGACGTGTTGAAACGTGTAGTGACTTATGCTTCTGGTCTTCCATTGGCTTTAGAAGTAATAGGTTCCAACTTGGTTGGAAAAAGTGTAGAAGAATGGGAGTCTGCGATTGAACATTACAAAAGAATTCCAAACGGTGAAATTATAGAGATACTTAAAGTAAGCTTTGATGCTTTGGGGGAAGAAGAAAAGAATGTCTTTCTTGACATCGCCTGTTGCTTGAAAGGAATTAGTTTGAAAGAAGTTGAACAAATACTTGGTGTTCTTTATGATAACAACATGAAACATCACATTGGGGTGTTGGTAAAAAAATCTCTCATAAAGGTTGGGCGTGAAAGGTTTAATGTAATTGAAATGCACGACTTGATTGAGGACATGGGTAGACAAATTGACCTGCAAAAGTCACCCAAAGAGGTAGGGAAGCGCAGGAGATTATGGTTAGGGAAAGATATCATTCATGTTTTAAAAGACAACAAGGGAACTAGCGAAACTGAAATCATATGCCTGGATTTGTCTATATCTGAAAAAGAAGAAACGATAGAATGGAATGCCAACGCCTTCAGAAGGATGAAAAACCTTAAAATACTTATCATTAGAAATGGTAAATTTTCCAAAGGTCCCAATTATTTTCCGGAAAGTTTGAGAGTACTGGAATGGCATGGATACCCTTCAAATTGTTTACCATCAAATTTTGATCCGAACAAGCTTGTGACATGCAAGTTACCTCACAGTTATTTTACGTCATTTGGATTCCTTGGCTCATCAAAGAAGTTCGAGAATCTAACTGTCTTGAATTTTGATGAGTGCAAATTTTTAACACAGACACCCGATATGTCTGATTTCGGAAATTTGGAGGAAGTTTCATTCAAAGATTGTGAGAGTTTAGTTAAAGTTCACGACTCCGTTGGTTTTATGAGTAAACTTAAAATATTGAATGCGGAAGGCTGCATCAAGCTTATGAGTTTTCCACCTCTCAACTTGCCCACTCTTGAAAGACTAGAACTTTCATATTGTTCGAATCTTGAGAAATTTCCAGAAATACTAGGAAAGATGGGAAACATAAGGGTACTTGAATTGGAGGAGCTTCCCATTAAAGAATTGCCAGTGTCGTTTCAAAATCTTATTGGACTCGAAGACTTATTCTTGTCATGTGAAATTGTTCATTTACCAAGTAGCATTGCCACGATGCCTAACTTGTTTGATTTTAGTGTTACTAATTGCAAGGGGTGGCAATGGGTAAAATCAGAAAATGCTGAAGATAACTTAGGCTCAGTGGTTCCTTCAAAGGTAGATTGGTTTTCGGCCTTGTCTTGCAACCTGGATGATGACTTCTTTTCAGCAGGTTTCATGCGGTTGGCACAAGTGCGTAGTTTATTTCTACGGTACAATAATTTCACACACCTTCCTGAATGCATCAAAGAATTTCACAACCTCTTCACTCTTGATGTGAGTCATTGCAAACATCTTCAGGAAATCAGAGGGTTTCCACCAAAACTAAAACTTTTCAAGGCAATAAACTGTATATCCTTGACTTCCTCCAGCTTAAGCATGTTGCTAAACAAGCAACTGCATGAAGCTAGAAAAACTGAGTTCTGGTTTCCAGGAGCAAGTTTTCCAGAGTGGGTTGATCTCCAGAGTAGTGGACCTTCTTGTTCTTTCTGGTTTCGTAATAAGTTTCCTGCCAAAGTTCTTTCTCTTCTTATAGCACCTGTGGGTGATAAAGATGAGTTTGGTTTCATTAGACCTATGGTGTTCATTGATGGCAAAGTTCAAGAATCACGAGCCTTTTATTTCGAGGAGATAGAGAGGATGTTTGATTTCGATCAAACATACCTCTTTGATCTACGAAAGCTACCAATCTATATGAATTTGTTTGACTTACCTTTAGAAAAGGAATGGAAGCATGTGAAGGTTACATATGAAGGTGTTATAGAGACCTCAATTGTTAAAGCAACAGGAATCCATATATTCAAAGAGGAAAACAGCATGGAAGACATTCGGTTTGATGATCCTTGTACCAACAACAAATTAGACAAAGATCTCAACGCTTCTCCATCACAAAACCACTTGTTAAGAACCATAGGTTTCTTCATGTGCAAATTTTTCATAGGCCTTTTTCTTTTTCTTTTTGGTGCTTTTATTTTTTATTATATTTACCGGCCTCAGCACCAACCCAACTAG 3288 0.3914 MATLSSRRFTYDVFLSFRGEDTRYGFTGNLYRALCDRGLHTFIDDDKLQSGDEITPALLKAIEESRIAIVVLSHNYASSSLCLDELTTILHCQSEGLLVIPVFYKVDPSYVRHQKGTYEEALAKHQKRFKAQKEKLQKWKIALRQVADFSGYHFKDGHEYQYEFTERIVERVSREINRAPLHVADYPVGLLSQVLQVKKLLDVGSDDVVHMIGIHGMGGLGKTTLSLAVYNLIADDFDSSCFLQNVREESNKHGLKHLQTVLLSELLGEKDINLASVQRGISVIQQRLGRKKVLLILDDVDNRKQLQAFAGRSDWFAPGSRVIVTTRDEQLLKCHEIERTYEVKELKKNDSLQLLIWNAFKREKVDPSYEDVLKRVVTYASGLPLALEVIGSNLVGKSVEEWESAIEHYKRIPNGEIIEILKVSFDALGEEEKNVFLDIACCLKGISLKEVEQILGVLYDNNMKHHIGVLVKKSLIKVGRERFNVIEMHDLIEDMGRQIDLQKSPKEVGKRRRLWLGKDIIHVLKDNKGTSETEIICLDLSISEKEETIEWNANAFRRMKNLKILIIRNGKFSKGPNYFPESLRVLEWHGYPSNCLPSNFDPNKLVTCKLPHSYFTSFGFLGSSKKFENLTVLNFDECKFLTQTPDMSDFGNLEEVSFKDCESLVKVHDSVGFMSKLKILNAEGCIKLMSFPPLNLPTLERLELSYCSNLEKFPEILGKMGNIRVLELEELPIKELPVSFQNLIGLEDLFLSCEIVHLPSSIATMPNLFDFSVTNCKGWQWVKSENAEDNLGSVVPSKVDWFSALSCNLDDDFFSAGFMRLAQVRSLFLRYNNFTHLPECIKEFHNLFTLDVSHCKHLQEIRGFPPKLKLFKAINCISLTSSSLSMLLNKQLHEARKTEFWFPGASFPEWVDLQSSGPSCSFWFRNKFPAKVLSLLIAPVGDKDEFGFIRPMVFIDGKVQESRAFYFEEIERMFDFDQTYLFDLRKLPIYMNLFDLPLEKEWKHVKVTYEGVIETSIVKATGIHIFKEENSMEDIRFDDPCTNNKLDKDLNASPSQNHLLRTIGFFMCKFFIGLFLFLFGAFIFYYIYRPQHQPN 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00476 1095 Gene3D - 178 340 IPR027417 -
Vian8g00476 1095 Gene3D Ribonuclease Inhibitor 500 797 IPR032675 -
Vian8g00476 1095 Gene3D - 9 177 IPR035897 -
Vian8g00476 1095 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 876 IPR044974 GO:0006952
Vian8g00476 1095 Gene3D Ribonuclease Inhibitor 800 901 IPR032675 -
Vian8g00476 1095 ProSiteProfiles TIR domain profile. 9 176 IPR000157 GO:0007165
Vian8g00476 1095 Gene3D - 345 429 IPR042197 -
Vian8g00476 1095 Pfam TIR domain 11 176 IPR000157 GO:0007165
Vian8g00476 1095 SMART till_3 10 149 IPR000157 GO:0007165
Vian8g00476 1095 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 152 IPR035897 -
Vian8g00476 1095 Coils Coil 122 142 - -
Vian8g00476 1095 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 439 IPR027417 -
Vian8g00476 1095 PRINTS Disease resistance protein signature 694 710 - -
Vian8g00476 1095 PRINTS Disease resistance protein signature 211 226 - -
Vian8g00476 1095 PRINTS Disease resistance protein signature 380 394 - -
Vian8g00476 1095 PRINTS Disease resistance protein signature 287 301 - -
Vian8g00476 1095 SUPERFAMILY L domain-like 550 889 - -
Vian8g00476 1095 FunFam Disease resistance protein (TIR-NBS-LRR class) 7 178 - -
Vian8g00476 1095 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Vian8g00476 1095 SUPERFAMILY "Winged helix" DNA-binding domain 416 525 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00476 Vian-Chr8 8061160 8064876 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00476 11 776 WRKY Transcription Factor Family AT4G12020 30.127 6.00e-78 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00476 - - var:108344036 1850.87