Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00475 ATGGGAAAGCCAAGAGGAGGAGAAGCTGCTCTTTGTTTTGTGGTTTTCTTCTGGTTTTGGAGCTCTTCCCATGCTTTGCTCTCTCCAAAGGGAGTAAACTTTGAAGTGCAAGCTTTAATCGGGATAAAAGCTTTTCTTGTGGATCCCCATGGTATTCTAGATAATTGGGATGCGGATGCAGTTGATCCATGCAGCTGGAATATGGTCACGTGTTCCCCTGACAATCTTGTTTTTGATGAACCTGGTTCTGCATTGTATAGGGGCATTCCCAGCCAAAATTTATCTGGTATTCTATCTCCAAGCATAGGAAACCTGACATATCTTCAGACTGTGGTGCTACAAAATAACAACATAACTGGTTCAATCCCTTCAGAGATAGGAAAACTTTCCAAGCTTCAAACTCTTGATCTCTCTGACAACTTCTTCAATGGGGAGATTCCTCCCTCTCTGGGTCACCTGAGAAGCCTCCAGTACTTGAGGCTCAATAATAACAGTTTTGATGGAGAATGCCCAGTGTCACTAGCTAACATGGCGCAGCTTGCTTTTCTTGACTTGTCCTACAATAATCTGAGTGGCCCTATACCTAGAATTTTGGCCAAATCCTTCAGTATTGTAGGAAACCCCTTAGTCTGCACCACAGGAAAAGAAAAAAATTGCCATGGGATGACACTTATGCCCATGTCGATGAACTTGAACAGTTCTGAGACAAATCTCTTTGCTTCCATAGATGCTTTACCATATGGTAGAACAAAGGCTCACAAAATGGCCATTGCCTTTGGTCTGAGTCTTGGATTCCTCTGCTTGGTAGCTTTTGGTCTTGGACTTATTCTATTGAGGAGGTACAAGCGTAAACAAAAGTCATTCTTTGATGTTAAAGATGGCAATGCAACTGGAGGAGATATACAATTTCAGACTGAAGTTGAAATGATAAGCTTGGCGGTGCACCGGAACCTCCTCAAACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCTTACATGTCCAATGGCAGTGTTGCTTCTAGGCTCAAGGGTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAGATTGCCATAGGAGCAGCAAGGGGACTGCTATACCTTCATGAGCAGTGTGATCCAAAGATAATCCACAGAGATGTGAAGGCTGCAAACATATTGCTTGATGACTATTGTGAGGCAGTGGTAGGGGATTTTGGGTTGGCTAAGCTTTTAGATCATCAAGATTCACATGTCACAACTGCAGTACGGAAAATCCATCAAGAGAAGAAGCTTGAGTTGCTTGTGGACAAGGATCTGATGAGCAACTATGACAGGATTGAGCTTGAGGAAATTGTTCAAGTGGCACTCTTGTGCACACAATATCTTCCTGGCCACAGGCCTAGAATGTCAGAAGTTGTACGCATGCTTGAAGGTGATGGTCTTGCAGAGAAATGGGAAGCTTCTCAAAGTGCTGACAACAGCAAATGCAACAAACCACATGAACTCTCTTCATCAGATAGGTATTCTGACCTCACTGATGACTCTTCTTTGTTGGTCCAAGCAATGGAACTCTCAGGCCCCAGGTGA 1581 0.4371 MGKPRGGEAALCFVVFFWFWSSSHALLSPKGVNFEVQALIGIKAFLVDPHGILDNWDADAVDPCSWNMVTCSPDNLVFDEPGSALYRGIPSQNLSGILSPSIGNLTYLQTVVLQNNNITGSIPSEIGKLSKLQTLDLSDNFFNGEIPPSLGHLRSLQYLRLNNNSFDGECPVSLANMAQLAFLDLSYNNLSGPIPRILAKSFSIVGNPLVCTTGKEKNCHGMTLMPMSMNLNSSETNLFASIDALPYGRTKAHKMAIAFGLSLGFLCLVAFGLGLILLRRYKRKQKSFFDVKDGNATGGDIQFQTEVEMISLAVHRNLLKLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKQIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRKIHQEKKLELLVDKDLMSNYDRIELEEIVQVALLCTQYLPGHRPRMSEVVRMLEGDGLAEKWEASQSADNSKCNKPHELSSSDRYSDLTDDSSLLVQAMELSGPR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00475 526 Gene3D Phosphorylase Kinase; domain 1 281 337 - -
Vian8g00475 526 FunFam Putative LRR receptor-like serine/threonine-protein kinase 32 221 - -
Vian8g00475 526 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 485 - -
Vian8g00475 526 Gene3D Transferase(Phosphotransferase) domain 1 338 419 - -
Vian8g00475 526 Gene3D Transferase(Phosphotransferase) domain 1 420 494 - -
Vian8g00475 526 Pfam Leucine rich repeat 107 165 IPR001611 GO:0005515
Vian8g00475 526 SMART serkin_6 275 474 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00475 526 FunFam Os07g0541700 protein 345 447 - -
Vian8g00475 526 SUPERFAMILY L domain-like 35 204 - -
Vian8g00475 526 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Vian8g00475 526 SUPERFAMILY Protein kinase-like (PK-like) 300 475 IPR011009 -
Vian8g00475 526 Gene3D Ribonuclease Inhibitor 32 221 IPR032675 -
Vian8g00475 526 Pfam Protein kinase domain 301 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00475 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 380 392 IPR008271 GO:0004672|GO:0006468
Vian8g00475 526 MobiDBLite consensus disorder prediction 485 508 - -
Vian8g00475 526 ProSiteProfiles Protein kinase domain profile. 239 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00475 Vian-Chr8 8021536 8025572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00475 27 421 Receptor kinase-like Gene Family AT2G23950 52.643 9.07e-149 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vian8g00475 Pkinase 3.4e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00475 - - tcc:18602162 594.349