Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00473 ATGTTGAAGGAAGGCACCAACAACGTTGGTGGCAGCTCCAGCACCTGGTCACGTGTCTGCGACACGTGCCGGTCAGCTCCATGCATAGTCTACTGCCATGCAGACTCAGCATACCTGTGTTCATCCTGTGATGCTCGTGTCCATGCAGCCAACCGTGTGGCCTCAAGGCACGAGCGTGTGTGGGTGTGTGAAGCGTGTGAACGTGCTCCCGCAGCGTTTCTTTGCAAAGCTGACGCAGCTTCTCTTTGTACTTCGTGTGATGCTGACATTCACTCAGCAAACCCTCTTGCCAGCCGCCACCACCGTGTCCCCATTCTCCCCATCTTGGGTCCCCTCTTGGTGGAACCAGATCACGAACCGGAACATGGTTTCGTGAACGAGGTGGAAGAGGAAGAGGAAGAAGTTTTCGATGAGTACGATGATGAGATTGAAGCTGCTTCGTGGTTGTTGCCACATCCTGTGAAGGGTAACCAAGAGGAGGAGAATGGTTTTTTGTACGGTGATGAGTATTTGGACAACCTTGTGGATTGTAACTCGTGTGGTCACCATAACCAGTTTAGCAACGTTTTTCAGCAGCAGCAGAACTACAACACTGTCCCTCAGAACTATGCAGTGGTTCCAGTTCAGGTGCTGCAACAATTGCAGCACTTTCAACCGGGTTTGGAATTTGACTCGTCAAAAGCTGGGTTCAGTTACGATGGTTCTATTAGCCAAAGCGTATCAGTTTCATCAATGGAAGTTGGTGTAGTCCCAGAATCAACAATAAGTGACATCTCAGTGTCCTATTCAAAGTCACCAATAGGGACAAGTGACCTATTTCCTCCCCTTCCCATGCCTTCACATCTTACACCAATGGACAGAGAGGCCAGAGTCCTAAGATATAGGGAGAAAAAGAAGACAAGAAAGTTTGAAAAGAAGATAAGGTATGCCTCAAGGAAGGCTTATGCAGAAACCAGACCACGCATCAAGGGTAGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTGGACCAAATGCTCTCCACAGCACTCTTCAATGAAAGATGCTCTCAACAGAGCAGAATCCCCGCCACGCTCTTTCTCTCCTCCGTCGTCGATGGGGCTCTGAATCTGAACCCCACCGGACTGGCTAGACTGCTCATGAGGTTCGAGAAGCTTCTCAAGAGTAGGATTTTCAGGACCCATTTGGGAACGTTTTTGGCTTTCTATAATGCTGTTCTAATAGCTTTCTGA 1233 0.4882 MLKEGTNNVGGSSSTWSRVCDTCRSAPCIVYCHADSAYLCSSCDARVHAANRVASRHERVWVCEACERAPAAFLCKADAASLCTSCDADIHSANPLASRHHRVPILPILGPLLVEPDHEPEHGFVNEVEEEEEEVFDEYDDEIEAASWLLPHPVKGNQEEENGFLYGDEYLDNLVDCNSCGHHNQFSNVFQQQQNYNTVPQNYAVVPVQVLQQLQHFQPGLEFDSSKAGFSYDGSISQSVSVSSMEVGVVPESTISDISVSYSKSPIGTSDLFPPLPMPSHLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTALFNERCSQQSRIPATLFLSSVVDGALNLNPTGLARLLMRFEKLLKSRIFRTHLGTFLAFYNAVLIAF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00473 410 SMART bboxneu5 15 62 IPR000315 GO:0008270
Vian8g00473 410 SMART bboxneu5 63 105 IPR000315 GO:0008270
Vian8g00473 410 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 20 343 IPR045281 GO:0009909
Vian8g00473 410 CDD Bbox1_BBX-like 19 62 - -
Vian8g00473 410 Pfam CCT motif 287 329 IPR010402 GO:0005515
Vian8g00473 410 Pfam B-box zinc finger 60 105 IPR000315 GO:0008270
Vian8g00473 410 ProSiteProfiles CCT domain profile. 287 329 IPR010402 GO:0005515
Vian8g00473 410 ProSiteProfiles Zinc finger B-box type profile. 15 62 IPR000315 GO:0008270
Vian8g00473 410 CDD Bbox1_BBX-like 62 105 - -
Vian8g00473 410 ProSiteProfiles Zinc finger B-box type profile. 58 105 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00473 Vian-Chr8 8007281 8010195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00473 1 347 C2C2-CO-like Transcription Factor Family AT3G02380 54.372 3.40e-117 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian8g00473 zf-B_box 6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00473 K12135 - gmx:100782635 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00473 8 8007281 8010195 Vian2g00230 2 2370450 2372544 PCT