Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00470 ATGCCCTTTCTTACAAAGTTTAACAGTATAGAGATGCTTCTCAATGCATCGAGCTCTGTTAGTGCATCCAATAAAAGATGGCACTCTGCATTCATGGCCATCTATTGCTCCCGAGCTATCATGTCACTCTCCGCTCGAAACAAAACATACAAAATCAAAGAAAAAGTCTCACCTACACCAACACCACCGCCATATTTCGTCATGGTTGATTTCAGCCCTCACCGTTCCTTTGGTATTGATCAAACAGTCCTCACGGATATTGTCAAAGATAAAGACCTTCAGAGCCTTGATACATTTGGTGGAGTTGAAGGGGTGGCAACAGCCCTTGAAACCCACCTCGAGTATGGTATCAAAGGTGCTGGTGGTGGTGATGATGAAGACATCACACGTAGAACACACGTGTTTGGTTCCAACACTTACCACAAACCACCTTCCAAAGGGTTCTTCCACTTTGTGGTGGAAGCCTTTAAGGATGTCACCATTCTCATCCTTTTGGCTTGTGCTGCTCTTTCCCTTGGCTTTGGCATCAAGGAACATGGAATCAAAGAAGGTTGGTACGATGGTGGAAGCATATTCGTTGCAGTGTTCATTGTGGTTTCCTTGTCAGCAGTGAGCAACTTCAGACAGAACAGACAGTTTGACAAGCTGTCCCAGGTGAGCAATGACATACAAATTGATGTGGTGAGAAGTGGGAGGCGTCAGCATTTGTCAATCTTTGAAATAGTTGTCGGTGATGTCATTTGCTTGAAGATTGGGGATCAAGTGCCAGCAGATGGGTTGTTCATTGAAGGGCATTCACTTAGAGTGGATGAATCAAGTATGACAGGAGAGAGTGATCATGTTGAAATCAGTAGACAGCACCCTTTCTTGTTCTCAGGCACCAAGGTGGCTGATGGGTATGCGAAGATGCTCGTTACCTCAGTTGGTATGAACACAACATGGGGCCAAATGATGAGTTCGATAAGCCGGGATAATGATGAGCAAACTCCTTTGCAAGAGAGGCTAAACAAGCTAACATCGTCCATTGGAAAGGTTGGTTTGGCTGTGGCTTTTCTTGTCCTTGTTGTTTTGCTGGTTAGGTACTTCACAGGGAATACGAAGGATGACCATGGGGTCAGAGAGTACAATGGAAGCAAGACCAAGTTTGATGACATAATGAATGCTGTTGTGGGAATTGTTGCTGATGCTGTTACCATTGTTGTTGTTGCAATCCCCGAGGGTCTTCCATTGGCTGTGACGCTCACTCTGGCTTATTCAATGAAGAAAATGATGGCTGACCAAGCAATGGTGAGAAAGCTCTCAGCATGTGAGACAATGGGTTCTGCCACCACAATTTGCACAGATAAGACTGGGACTCTCACACTCAATGAGATGAAAGTAACCAAGTTCTGGATTGGCCAAGAAACCGTGGCAGAAACTGAAAATGCCAACTCAAAGGTTGCTCCAGTTGTTCTTCAACTTATCCAAGAAGGGGTGGCTCTAAACACAACTGGTAGTGTGCACAAATCCAATAAATCAGGTTCTGAATTTGAGTTTTCAGGCAGTCCCACAGAAAAAGCCATCCTATCCTGGGCAGTTTTGGAATTGAACATGGAGACGGAGCACTTGACAAAAAGCTGTTCCATCATTCAGGTTGAGACCTTCAACTCAAAGAAGAAAAAAAGCGGAGTTTTGTTGAGAAGGAAGGCAGACAACACAGTTAATGCTCACTGGAAAGGAGCAGCTGAGATGGTACTAAAGATGTGCTCAAGATACTATGATGCTTCTGGTACTGTGAAAGATCTTGACATTGATACAATGTTGAAGTTTGAACACATCATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGCATTGCTTTTGCACATGTAGAAGTACCTGAGGAAGAGCTTGGAGATGAAAACACAACGGGGAAAGTGAAAGACAGTGGTTTAACATTGTTAGGGGTGGTTGGGATTAAGGATCCATGTCGTCCAGGGGTGAAGAAGGCTGTGGAAGCTTGCCAAAAGGCTGGTGTGAACGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAGGGCTATAGCAAGCGAATGTGGGATACTCCGGCCAAATCAGGACACAGCTGGAGCAGTGATTGAAGGAGAGGAATTTCGCAACTACACACCTGAAGAGAGGCTGGAGAAGGTGGAAAAAATCTGTGTGATGGCCAGATCTTCTCCTTTTGACAAACTTCTAATGGTTCAATGTCTGAAGCAGAAAGGCCATGTAGTTGCTGTTACCGGGGATGGCACAAATGACGCACCAGCACTGAAAGAAGCTGACATTGGACTCTCTATGGGAATTCAAGGTACTGAAGTGGCCAAAGAGAGCTCAGACATTGTTATTTTGGATGACAATTTTGCATCTGTGGTGACTGTCTTAAGGTGGGGAAGGTGTGTTTACAACAACATACAGAAGTTCATTCAGTTTCAGTTGACAGTGAATGTTGCAGCACTTGCTATCAACTTTGTGGCAGCAGTATCAGCAGGGGAAGTGCCACTCACAGCAGTACAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCACTTGCAACAGAAAAGCCCACCAATGAATTGATGGACAAACCACCAGTTGGTAGAACAAAACCTCTAATCACCAATGTCATGTGGAGGAATCTATTGGCTCAAGCTTTGTACCAGATAGCAGTTTTGCTGACTCTTCAATTCAAAGGTGAGTCTATCTTTGGTGTGACATCAGGGGTAAATGACACATTGATTTTCAACACGTTTGTTCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTATTCAAAGGCATACACAGGAGCAAGTTGTTTTTAGGCATCATTGCCATAACAATAATCCTTCAGGTTGTTATGGTTGAGTTTCTAAAGAAGTTTGCTGACACAGAGAGGCTAAATTGGGGGCAATGGGCTATCTGCATTGGTCTAGCTGCAGTTTCCTGGCCAATAGGTTGGGTTGTGAAGTTGATACCTGTCCCAGAGAAACCGTTTCTCAGTTTTTTGAGAATCAAGAAATGA 3075 0.4413 MPFLTKFNSIEMLLNASSSVSASNKRWHSAFMAIYCSRAIMSLSARNKTYKIKEKVSPTPTPPPYFVMVDFSPHRSFGIDQTVLTDIVKDKDLQSLDTFGGVEGVATALETHLEYGIKGAGGGDDEDITRRTHVFGSNTYHKPPSKGFFHFVVEAFKDVTILILLACAALSLGFGIKEHGIKEGWYDGGSIFVAVFIVVSLSAVSNFRQNRQFDKLSQVSNDIQIDVVRSGRRQHLSIFEIVVGDVICLKIGDQVPADGLFIEGHSLRVDESSMTGESDHVEISRQHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISRDNDEQTPLQERLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTKDDHGVREYNGSKTKFDDIMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTKFWIGQETVAETENANSKVAPVVLQLIQEGVALNTTGSVHKSNKSGSEFEFSGSPTEKAILSWAVLELNMETEHLTKSCSIIQVETFNSKKKKSGVLLRRKADNTVNAHWKGAAEMVLKMCSRYYDASGTVKDLDIDTMLKFEHIIQGMAASSLRCIAFAHVEVPEEELGDENTTGKVKDSGLTLLGVVGIKDPCRPGVKKAVEACQKAGVNVKMITGDNVFTARAIASECGILRPNQDTAGAVIEGEEFRNYTPEERLEKVEKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTNELMDKPPVGRTKPLITNVMWRNLLAQALYQIAVLLTLQFKGESIFGVTSGVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIIAITIILQVVMVEFLKKFADTERLNWGQWAICIGLAAVSWPIGWVVKLIPVPEKPFLSFLRIKK 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00470 1024 Pfam Cation transporter/ATPase, N-terminus 100 171 IPR004014 -
Vian8g00470 1024 SUPERFAMILY HAD-like 444 859 IPR036412 -
Vian8g00470 1024 FunFam Calcium-transporting ATPase 771 1013 - -
Vian8g00470 1024 Gene3D - 154 1008 - -
Vian8g00470 1024 FunFam Calcium-transporting ATPase 198 322 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 270 284 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 670 680 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 446 460 - -
Vian8g00470 1024 PRINTS P-type cation-transporting ATPase superfamily signature 648 659 - -
Vian8g00470 1024 Pfam Cation transporting ATPase, C-terminus 839 1009 IPR006068 -
Vian8g00470 1024 PRINTS H+-transporting ATPase (proton pump) signature 603 621 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00470 1024 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00470 1024 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00470 1024 NCBIfam calcium-translocating P-type ATPase, PMCA-type 92 1011 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian8g00470 1024 PANTHER CATION TRANSPORTING ATPASE 67 1011 - -
Vian8g00470 1024 Pfam E1-E2 ATPase 224 424 - -
Vian8g00470 1024 SUPERFAMILY Calcium ATPase, transmembrane domain M 100 1011 IPR023298 -
Vian8g00470 1024 SFLD Haloacid Dehalogenase 428 807 - -
Vian8g00470 1024 Pfam haloacid dehalogenase-like hydrolase 443 768 - -
Vian8g00470 1024 CDD P-type_ATPase_Ca_PMCA-like 128 887 - -
Vian8g00470 1024 SUPERFAMILY Calcium ATPase, transduction domain A 224 320 IPR008250 -
Vian8g00470 1024 SFLD p-type atpase 428 807 IPR044492 -
Vian8g00470 1024 Gene3D - 443 799 IPR023214 -
Vian8g00470 1024 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 452 660 IPR023299 GO:0000166
Vian8g00470 1024 FunFam Calcium-transporting ATPase 456 655 - -
Vian8g00470 1024 NCBIfam HAD-IC family P-type ATPase 727 835 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00470 1024 NCBIfam HAD-IC family P-type ATPase 389 477 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian8g00470 1024 ProSitePatterns E1-E2 ATPases phosphorylation site. 448 454 IPR018303 -
Vian8g00470 1024 Gene3D - 456 655 IPR023299 GO:0000166
Vian8g00470 1024 Gene3D - 124 322 - -
Vian8g00470 1024 FunFam Calcium-transporting ATPase 649 799 - -
Vian8g00470 1024 SMART Cation_ATPase_N_a_2 92 176 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00470 Vian-Chr8 7922248 7925322 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00470 10 1024 Primary Pumps ATPases AT3G22910 68.891 0.0 1343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00470 K01537 - gmx:100793918 1735.7