Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00468 ATGAGGAAACCTGATATGATGGCAAAAGACAAACTCAACACCACCACCACCATTAACACCACCACCACCAACAACAACAACATTAAGAGCAAGTTAAGAAAAGGGTTGTGGTCACCTGAGGAAGATGAGAAACTGATAAGGTACATGATCACTAAGGGACAAGGATGTTGGAGTGACATTGCAAGGAATGCTGGCCTTCAAAGGTGCGGCAAAAGTTGTCGTCTTCGTTGGATCAACTACCTCAGACCTGATCTCAAACGTGGTGCATTCTCACCCCAAGAGGAAGAACTCATCATCCATTTGCACTCCCTTCTTGGAAACAGATGGTCTCAGATTGCTGCACGTCTTCCTGGTCGCACAGACAATGAGATAAAGAATTTCTGGAACTCAACACTGAAGAAAAGGTTGAAAATGAGCAGCAGCAACATCAACAACACTTCATCACCAAACAACAGTGACTCATCAGACCCTAGAGATGTCATGGGGGGGATAATGCCAATGAATGATCAGCATGACCTCATGACCATGTGCATGGACTCCTCCTCATCAACATCATCATCATCCATGCAATCCATGCAAGCCAACATGGCACTAACAGACCAATTTGACCCCTTTCCTTTGTTGTCCAACCGCTATGACATGACCACCGGTGCAGCCGGTTTCCTTGACAACATGGCTGCATGCTTAAACCAAGTTGGTATGGTAGATCATGATGATGGGGTTGTTCATGGAGGTTATGGGGCATTGGAACCTAATAAAATGGGGTTAGAAAGCGACTTTTCCCTTCCTCCACTAGAAAGTAGAAGCATTGAGGAGAATTCTAGTAACCCAATTGATGTGAAAAGCCATAACAACAACCACTTGAAGAACAGTTGCTTCAGTAACACTGATCATCACCATCACCATCATCATCATCATCATAATTTTCAAACCTCCAACAACGTAGTTGTAGAGGATTTGTTTGGTTTTGGAAATCATGGGCAAGGGGAAAACTTTAGAATGGGAGAATGGGACTTTGAGGGTTTGATGCAAGACATGTCCTATTTCCCTTCCCTTGATTTCCAAGTTTAA 1071 0.4379 MRKPDMMAKDKLNTTTTINTTTTNNNNIKSKLRKGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKMSSSNINNTSSPNNSDSSDPRDVMGGIMPMNDQHDLMTMCMDSSSSTSSSSMQSMQANMALTDQFDPFPLLSNRYDMTTGAAGFLDNMAACLNQVGMVDHDDGVVHGGYGALEPNKMGLESDFSLPPLESRSIEENSSNPIDVKSHNNNHLKNSCFSNTDHHHHHHHHHHNFQTSNNVVVEDLFGFGNHGQGENFRMGEWDFEGLMQDMSYFPSLDFQV 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00468 356 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Vian8g00468 356 SMART sant 86 134 IPR001005 -
Vian8g00468 356 SMART sant 33 83 IPR001005 -
Vian8g00468 356 MobiDBLite consensus disorder prediction 138 157 - -
Vian8g00468 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 81 IPR017930 -
Vian8g00468 356 FunFam Transcription factor MYB46 88 160 - -
Vian8g00468 356 FunFam MYB transcription factor 31 87 - -
Vian8g00468 356 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Vian8g00468 356 Gene3D - 88 160 - -
Vian8g00468 356 CDD SANT 37 81 IPR001005 -
Vian8g00468 356 Gene3D - 31 87 - -
Vian8g00468 356 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Vian8g00468 356 Pfam Myb-like DNA-binding domain 87 131 IPR001005 -
Vian8g00468 356 PANTHER MYB DOMAIN PROTEIN 55 28 309 - -
Vian8g00468 356 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Vian8g00468 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 136 IPR017930 -
Vian8g00468 356 CDD SANT 89 132 IPR001005 -
Vian8g00468 356 MobiDBLite consensus disorder prediction 138 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00468 Vian-Chr8 7899952 7902393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00468 1 356 MYB Transcription Factor Family AT3G08500 46.011 8.97e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00468 Myb_DNA-binding 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00468 K09422 - gmx:100813660 524.242