Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00465 ATGTCTAGTCATGATCACCATCACCAACATCTTTCTTCCAATCCCTCCGCGCACCTCTCCACTCACTCCGATTCTGATTCCGATTCCGACTCAGTGAGTTGCTTCGTCACCGATCTCTTCGAGACTCGGTCACGCCTCTGTTCCTGCGACGACACTGATATTAACCCTTTCTCCGGCGCCGTCTGCGACGTCCATCGCACTGAACACGTGCTAGGGTTAGGGTTTGGCGTTGACATTGATTCCCAAACGCGGGATAACGATGATAATAATGGCGATAGAGTCTTCAATTTCGCGTTGGGGGATGGTTCGGGAGGGCTTAGGGTTGTAGCGTTCGGGTCGGATTCGGATGATTCGAGTGGCGGGGAGGGTGGGGTTCGTGATGAGGGTGGTGGGTTTGACGATTTCGATGTTCGGTTTTGTTGGGATAGTCTCTGTTTGGATGATCAGAGGACACTGAATGATGGTTTTGAATGGGAGGAAGTTGAGCAGAGGGTGAATGATAGGGAGGATTCGGGTTTGGTGGCTGATGAGGTTGAAGTTGAAGACGATGGAGATTGTGATTCGGTGGGGTTTACTAATGCCGATGAGGAAGAGGAGGAGGAGGATGGAGGTGAAGAGGCGCTGAGGTACCTTGAGTGGGAGATTCTCTTAGCGGTTAACAATTCGGAGAGGAATGTTAACAATGGTGATGGTTTGGAGCATGAGGGCGTAGCTGGTGCTGCTGATTTGCTGACAATTCGAGATGGTTATGTGTATGCGGCGGAGTATGATGTTCTATTCGGGCAGTTTCTTGAGAATGAGAGTGCCTTGAAGGGAAGTCCTCCCGCCGCGAAGAGTGTTGTGGAGAGTCTTCCATTGGTGGAGTTGTCGAAGGAGGAGCTGTTGCAGGGGAAGAACTTGGCGTGCGCCATTTGCAAGGATGAAATTTTGTTGGAGGAGAAGGTCAGGAGGTTGCCTTGCTCCCACTGTTACCATGGCGATTGCATTTTGCCATGGTTGGAAATTCGCAACACATGCCCAGTTTGTCGGTTTGAGCTGCCCACAGATGATCCGGACTATGAGCAGAGGAAGGTTCACAGGGCTGCTCATGATCTGTTGGAGCTTGCAACGGCAGGGATACAATTTTGA 1128 0.5106 MSSHDHHHQHLSSNPSAHLSTHSDSDSDSDSVSCFVTDLFETRSRLCSCDDTDINPFSGAVCDVHRTEHVLGLGFGVDIDSQTRDNDDNNGDRVFNFALGDGSGGLRVVAFGSDSDDSSGGEGGVRDEGGGFDDFDVRFCWDSLCLDDQRTLNDGFEWEEVEQRVNDREDSGLVADEVEVEDDGDCDSVGFTNADEEEEEEDGGEEALRYLEWEILLAVNNSERNVNNGDGLEHEGVAGAADLLTIRDGYVYAAEYDVLFGQFLENESALKGSPPAAKSVVESLPLVELSKEELLQGKNLACAICKDEILLEEKVRRLPCSHCYHGDCILPWLEIRNTCPVCRFELPTDDPDYEQRKVHRAAHDLLELATAGIQF 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00465 375 ProSiteProfiles Zinc finger RING-type profile. 302 343 IPR001841 -
Vian8g00465 375 FunFam E3 ubiquitin-protein ligase RING1-like 262 349 - -
Vian8g00465 375 Pfam Ring finger domain 301 343 IPR001841 -
Vian8g00465 375 SUPERFAMILY RING/U-box 289 350 - -
Vian8g00465 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 188 347 - -
Vian8g00465 375 SMART ring_2 302 342 IPR001841 -
Vian8g00465 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 349 IPR013083 -
Vian8g00465 375 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00465 Vian-Chr8 7804628 7805755 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00465 102 357 C3H Transcription Factor Family AT3G02340 39.929 9.58e-45 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00465 - - vra:106778727 657.521