Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00444 ATGGGAAGAGGAAGGGTTCAGCTGAAGCAGATCGAGAACAAAATCAGTCGCCAAGTCACCTTCTCCAAAAGGAGAACCGGGCTGCGCAAGAAAGCTCATGAAATCTCTGTGCTCTGTGATGCTCAAGTCGCACTGATTGTCCTCAATGCCAAAGGGAAACTCTTTGACTATTCGTCTGAATCCAGTATGGAAAACGTCCTTGAAAGATATGAGAGACACGCCCACATAGGGCAACTTGTTGAAGATGGTGATGAATCACAGGGCAACTGGTCCTTGCAATGCTTCAAGCTCACCGGCAAAGTTGAAGTCTTAGAGAAAAACTTAAGGAACTTTGTTGGACAAGATCTGGATCCTTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCATCAGCTTGACACAGCTATAAAGCGCATCCGAACTAGAAAGAACCAAGTGATGAATGAATCGATCTCAGATCTGCAGAAAAAGGCAAAGCAACTGCAGGAGCAAAATGGAACGCTTACAAAGAAGATTAAGGACAAAGGAAAGGCAGTGGCTGAACGTTCACAGTGTCCTCCACAGCTACAACTACATCATAGACTTGTTCCTTCTTTAACACCTGCTCAGAATTCAGGAGAAGTGGATGAAGGAGGAGCAATTCCTAGTACGACTACTCTCATACCACCATGGATGCTGCATCAGTTTGCGAGATGA 693 0.4531 MGRGRVQLKQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVLNAKGKLFDYSSESSMENVLERYERHAHIGQLVEDGDESQGNWSLQCFKLTGKVEVLEKNLRNFVGQDLDPLSLRELQSLEHQLDTAIKRIRTRKNQVMNESISDLQKKAKQLQEQNGTLTKKIKDKGKAVAERSQCPPQLQLHHRLVPSLTPAQNSGEVDEGGAIPSTTTLIPPWMLHQFAR 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00444 230 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian8g00444 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Vian8g00444 230 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vian8g00444 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vian8g00444 230 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Vian8g00444 230 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Vian8g00444 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 162 - -
Vian8g00444 230 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Vian8g00444 230 Coils Coil 124 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00444 Vian-Chr8 7476439 7496633 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00444 1 184 MADS-box Gene Family AT1G26310 57.979 1.16e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vian8g00444 K-box 2.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00444 K09264 - gmx:100787971 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00269 2 2790758 2797274 Vian8g00444 8 7476439 7496633 PCT