Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00429 ATGAGGCTTGTCATTTCAACTTTCTGTGTTCTTGTGTTATTCTCTTGTGCTGTTGCTTATGATCCTTTGGATCCAAACGGAAACATAACAATCAAATGGGATATCATGTCTTGGACACCAGATGGCTATGTGGCAACTGTAACAGTCCACAATTTCCAAATGTTTCGGCACATCATGAATCCTGGATGGACCTTGGGATGGACATGGGCCAAGAGAGAAGTGATTTGGTCCATGATAGGAGCTCAAGCCACAGAGCAAGGAGATTGTTCTAAGTTTAAAGGCAACATACCTCATTGCTGCAAGAAAAATCCCACAGTTGTAGATCTACTCCCTGGTGTTCCATACAACCAGCAATTCACAAACTGCTGCAAGGGTGGAGTGGTGGCTGCATGGGGCCAAGATCCTTCACAAGCTATCTCATCCTTCCAAATTAGTGTAGGCCAAGCTGGTACCACAAACAAGACAGTGAAACTTCCCAAGAATTTCACTCTCTTGGCTCCTGGACCAGGCTATTCCTGTGGCCCTGCCAAGATTGTTCCTTCCACCACTTTCCTTACCTCTGACAAGCGCCGCAAGACTCAAGCACTAATGACATGGAATGTTACCTGCACATACTCACAGTTCCTGGCAAGAAAGAATCCAAGTTGTTGTGTATCTTTGTCTTCCTTCTATAATGAAACTATCACCCCTTGTCCCTCTTGTGCCTGTGGCTGCCACAACAAGAAGAATTGTGTCAAGCGTGACTCCAAAATTCTCAGCATGGTGGGTCTCCACACTCCCAAGAAAGACAATGAACCATTGTTGCGGTGCACTCATCACATGTGTCCAATCAGGGTTCACTGGCATGTCAAGGTTAACTATAAGGACTATTGGAGAGTCAAGATTGCCATTACAAACTTCAATTACAGGATGAATCACTCTCTCTGGTCTCTTGCTGTTCAGCATCCAAATCTTAATAATCTCACCCAAGTTTTCAGTTTTAATTACAAGCCTCTTCTTCCCTATGGTTCAATAAATGACACTGGCATGTTCTATGGCATGAAATACTTCAATGATCTTCTAATGGAAGCTGGACCAACTGGGAATGTTCAATCAGAGTTGCTTCTTCAGAAGGACAAGGATACATTCACATTCAAGCAGGGGTGGGCTTTTCCTCGCAAGATCTACTTTAATGGCGATGAGTGCATGATGCCTCCACCTGACACCTACCCATTTCTACCTAACTCAGCACCTCCAAGCCTAATTACCTTCCCACCATCTATTTTCTTGCTGCTTTTCTTTTTAGCAGTGTGGTGA 1296 0.4421 MRLVISTFCVLVLFSCAVAYDPLDPNGNITIKWDIMSWTPDGYVATVTVHNFQMFRHIMNPGWTLGWTWAKREVIWSMIGAQATEQGDCSKFKGNIPHCCKKNPTVVDLLPGVPYNQQFTNCCKGGVVAAWGQDPSQAISSFQISVGQAGTTNKTVKLPKNFTLLAPGPGYSCGPAKIVPSTTFLTSDKRRKTQALMTWNVTCTYSQFLARKNPSCCVSLSSFYNETITPCPSCACGCHNKKNCVKRDSKILSMVGLHTPKKDNEPLLRCTHHMCPIRVHWHVKVNYKDYWRVKIAITNFNYRMNHSLWSLAVQHPNLNNLTQVFSFNYKPLLPYGSINDTGMFYGMKYFNDLLMEAGPTGNVQSELLLQKDKDTFTFKQGWAFPRKIYFNGDECMMPPPDTYPFLPNSAPPSLITFPPSIFLLLFFLAVW 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00429 431 PIRSF COBRA 1 431 IPR006918 GO:0010215|GO:0016020
Vian8g00429 431 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vian8g00429 431 Pfam COBRA-like protein 43 206 IPR006918 GO:0010215|GO:0016020
Vian8g00429 431 PANTHER PROTEIN COBRA 7 417 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00429 Vian-Chr8 7255304 7257318 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00429 1 430 COBRA Gene Family AT3G29810 66.742 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00429 - - gmx:100798678 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00429 8 7255304 7257318 Vian2g00281 2 2954035 2957151 PCT
Vian2g00280 2 2943592 2946748 Vian8g00429 8 7255304 7257318 PCT