Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00420 ATGAAGTTCCTTACTGTCACCACCTCCTTCACATTACTCTTCTTCCTTCTACACTTCTTCACACACCTCCAAGCCTATATCCCATCGGAAGTTCTCCCTATCAGTTGCGGTTCCACCGGAATGTCCTCCGATGGTCAAAGAATGTGGGCCGGCGACACAGACCCAATGTTCTTTACTTTCCAAGACGGCTCTGTTTCAGAGAAGGCAACAACACAGTCTTCTTCCACCAATAAAATACCCTTCTCCACCGCACGCTTGTCCCGTTCCCCATTCAACTACTCCTTCCAACTCTCCGCAGGCACCAAATTCCTTCGCCTCTTCTTCTACCCTGCCGATTACCCTTCCTTTCCCCGCACCCACGCATCCTTCACCGTTCAATCCAACCAATTCACTCTTCTTGAAGCTTTCAACGCCTCTCTTAACGCAGACGCTCAAGCCACCGACACTATCTTCAAAGAATACGTGGTCAATGTCAACGACGATAAGGGGCTTATCCTCACCTTCACTCCCTCGCTTCCAAACTCCTACGCTTTCGTCAATGGAATCGAGGTACTTTCTATGCCAACCGATTTATATTACACACTAGAAAATGAGACAGGGTTCACGATGATCGGAACTAGCACGCTGTACAGCGTTGAAACCAGCTTTGCTCTTCAGACTGAGTATAGAATCAAAACCGGAGAACAAGAAATCCCGCCACAATACGACACCGGTTTGTTCAGGAATTGGGCTGCCGAAGAACGTTACTTTATCAAAGGCAATCCAAATAATGATGATCTACCAGGTGACATGGATGGGAAAATGAACATAACCGTGAATCCCGATTACGTCGCACCAAAGGAACTGTTCAGAACAGCGCGTAACATGGGCACAAACGCCACTCTGAATAAAATGTCCAACCTCACTTGGGTGTTCCCCGTTGATTGTGGCTTCACTTACGTTGTCAGACTCCATTTCTGCGAGCTTGATCCTCATATCAATGACATCGGTGACAGGCAGTTCTATATTTACATAGCGAGCCAGTTGGCTGAACCAGGTGCAGATGTAATGAAATGGAGTCAGAAACAAAAAGGTCTAGCTGTGCATAAAAACTATGCTATTTTGATTCCCAAGAATGATGCTCAGAAAAAGTTTAATCTCTCGCTTCAAATGCATCCTTACGAAAGCAGTGTGGATACGAGATACAGCGACGCCTTCCTGAACGGTCTCGAGATCTTCAAAATCAGTGATTCGAACAACCTAGCCGGACCCAACCCGGAACCGGTTCAGACTCCACAGAACAACGTTCCCGGCCAAAACGGAAATACCAGCAGCGGAATCGCAACGAATATTGGTATCACGGCGGGGGTAGTTTCCGGTGTCGTTTTCATCTCGCTTGTAGTTTTCTTTATCCTGTCGTTGACCACTTCCAAGTGGAGTGCACTGTTGTTCTCAACGACCAAGTCAACCACCCGTCGGAACTTTTCTGTGCCTTCTGATCAGTGCCGTCGGTTTTCCCTCGTCGAGATCAAAGCTGCCACCAAAAACTTCGACAACTCCTTCGTCGTCGGCGACGGTGGATTTGGACACGTGTACAAGGGCTTCATCGACGACGGCTCAGTCCCCGTTGCTATCAAGCGCCTTAGACAGGGTTCCCAGCAGGGGGCCAGCGAGTTCGTTAACGAGATCCAGATGCTCTCGCAACTCCGCCACCGCCATCTCGTCTCACTCATCGGTTACTGCTGCGATAACAACGAGATGATCCTCGTTTACGAGTTCATGGGATGTGGAAACCTCCGCGACCATCTCTACGGCACTGATAACCCCCCTCTCTCATGGAAGCAGCGGTTGAAGATTTGCATTGGCGTTGCCCGCGGGCTACGCTATCTTCACAGTGGCGCGAAGCACATGATCATCCACCGTGACGTGAAAACGACGAACATCTTGTTGGATGAGAGATGGGTGGCGAAGGTTTCGGATTTCGGACTATCCAGAATTGGGCCGAATGAGATGTCGAAGGCCCATGTGAGCACCGCCGTGAAAGGCAGCTTTGGGTATTTGGATCCGGAATATTACATTCGACGGCGGCTGACGGAGAAGTCTGACGTGTATTCTTTTGGGGTGGTGTTGTTTGAGGTGCTCTGTGCCCGTTCTCCTCTTATCCATACTGAAGAAATCGAACAGGTGTCACTGGCTAATTGGGCAAGATATTGTTGTCAAAATGGGACAGTGACGGAGATTATGGACCCCATATTGAAGGAGAAGATCGCTCCTGATTGTTTGGCCAAGTTTTGTGAGATTGGGGTGAGTTGTTTATCACAAGAGGGTATGCAGAGGCCTTCCATGAACGATGTCGTTTTGATGTTAGAGTCTGCACTGAAACTGGAAGAAGAGAGTGCCGACCAAGGTGCAACACAGGAAGATATTGACCATGTGCTTGATCTTGGAGAGCACCACAATAGTTGCAAGGATAATGATAAGTTGATGTTGGATCTTTTTTCTGAGATTGTCGACCTAGAGCCGCGTTGA 2508 0.4868 MKFLTVTTSFTLLFFLLHFFTHLQAYIPSEVLPISCGSTGMSSDGQRMWAGDTDPMFFTFQDGSVSEKATTQSSSTNKIPFSTARLSRSPFNYSFQLSAGTKFLRLFFYPADYPSFPRTHASFTVQSNQFTLLEAFNASLNADAQATDTIFKEYVVNVNDDKGLILTFTPSLPNSYAFVNGIEVLSMPTDLYYTLENETGFTMIGTSTLYSVETSFALQTEYRIKTGEQEIPPQYDTGLFRNWAAEERYFIKGNPNNDDLPGDMDGKMNITVNPDYVAPKELFRTARNMGTNATLNKMSNLTWVFPVDCGFTYVVRLHFCELDPHINDIGDRQFYIYIASQLAEPGADVMKWSQKQKGLAVHKNYAILIPKNDAQKKFNLSLQMHPYESSVDTRYSDAFLNGLEIFKISDSNNLAGPNPEPVQTPQNNVPGQNGNTSSGIATNIGITAGVVSGVVFISLVVFFILSLTTSKWSALLFSTTKSTTRRNFSVPSDQCRRFSLVEIKAATKNFDNSFVVGDGGFGHVYKGFIDDGSVPVAIKRLRQGSQQGASEFVNEIQMLSQLRHRHLVSLIGYCCDNNEMILVYEFMGCGNLRDHLYGTDNPPLSWKQRLKICIGVARGLRYLHSGAKHMIIHRDVKTTNILLDERWVAKVSDFGLSRIGPNEMSKAHVSTAVKGSFGYLDPEYYIRRRLTEKSDVYSFGVVLFEVLCARSPLIHTEEIEQVSLANWARYCCQNGTVTEIMDPILKEKIAPDCLAKFCEIGVSCLSQEGMQRPSMNDVVLMLESALKLEEESADQGATQEDIDHVLDLGEHHNSCKDNDKLMLDLFSEIVDLEPR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00420 835 SUPERFAMILY Protein kinase-like (PK-like) 494 786 IPR011009 -
Vian8g00420 835 CDD STKc_IRAK 516 783 - -
Vian8g00420 835 Pfam Protein tyrosine and serine/threonine kinase 516 780 IPR001245 GO:0004672|GO:0006468
Vian8g00420 835 PANTHER OS03G0124300 PROTEIN-RELATED 9 471 IPR046957 GO:0004672
Vian8g00420 835 FunFam FERONIA receptor-like kinase 31 188 - -
Vian8g00420 835 FunFam FERONIA receptor-like kinase 216 409 - -
Vian8g00420 835 Pfam Malectin-like domain 34 408 IPR024788 -
Vian8g00420 835 SMART serkin_6 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00420 835 Gene3D Phosphorylase Kinase; domain 1 471 586 - -
Vian8g00420 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 631 643 IPR008271 GO:0004672|GO:0006468
Vian8g00420 835 ProSiteProfiles Protein kinase domain profile. 510 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00420 835 ProSitePatterns Protein kinases ATP-binding region signature. 516 539 IPR017441 GO:0005524
Vian8g00420 835 FunFam Receptor-like protein kinase FERONIA 587 804 - -
Vian8g00420 835 Gene3D Transferase(Phosphotransferase) domain 1 587 810 - -
Vian8g00420 835 FunFam receptor-like protein kinase FERONIA 474 586 - -
Vian8g00420 835 Gene3D - 217 409 - -
Vian8g00420 835 Gene3D - 30 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00420 Vian-Chr8 7101679 7104186 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00420 26 796 Receptor kinase-like Gene Family AT3G51550 47.512 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vian8g00420 Malectin_like 7.4e-32 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00420 - - vra:106770147 1401.73