Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00408 ATGGTTCTTCAAAACGATATTGATTTGCTGAATCCTCCCGCTGAGTTGGAGAAGAAAAAGCACAAGCTCAAGCGTCTTGTTCAGTCACCAAATTCTTTTTTTATGGATGTCAAGTGCCAAGGCTGCTTCAACATAACAACTGTGTTTAGCCACTCTCAGACAGTTGTGGTATGTGGCAACTGCCAGACTGTGTTGTGCCAACCAACAGGTGGAAGAGCCAGGTTAACTGAAGGGTGCTCATTTAGGAAGAAGGGAGATTGA 261 0.4444 MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00408 86 FunFam 40S ribosomal protein S27 1 86 - -
Vian8g00408 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vian8g00408 86 PANTHER 40S RIBOSOMAL PROTEIN S27 1 86 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vian8g00408 86 Gene3D - 5 85 IPR023407 -
Vian8g00408 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Vian8g00408 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Vian8g00408 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00408 Vian-Chr8 6953480 6954240 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00408 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 2.54e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00408 K02978 - tcc:18601152 169.474