Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00397 ATGGTTCCCGTAAAACCCAAACTTGGCAAGATGCTCAATTTAGGAACCATCTTCAAGTGTTTGGATCCTATAATGGCAGTTGTTGCTGGTCTAAGTGTAAAAGATCGACTTGTGACGCCATCTGACAAGAAGTATGGAAATCAAGCATATAAAGATAGGCAGTGGCAGAAAGCCATTGGATTTTACACAGAAGCTATCAAACTCTGTAGTGATAATGCAACGTACTATAGTAATAGGGCTCAAGCGTATCTAGAACATGGAAGTTATCTTCAAGTTGAGGCCGATTGTACCAAGGCAATTAGTCTTGACAAAAATGTGTCTTCCTTAAAAAAAACATTGTGCATGAATTTTGTCATCGTAGTCTTTCAAAAGCTTGTCTTCATTCCAAATATGATCCTCACAGAAGCTTGTCTTCATCACCGTAAGCATCAACTAAAGGTTGAAAGCAATGGACAGAAGTCTACTAACAATGACTTGTTGGGCATACTCTTGGAATCAAATTGTATTTTAAAGTGTCAATGA 522 0.3793 MVPVKPKLGKMLNLGTIFKCLDPIMAVVAGLSVKDRLVTPSDKKYGNQAYKDRQWQKAIGFYTEAIKLCSDNATYYSNRAQAYLEHGSYLQVEADCTKAISLDKNVSSLKKTLCMNFVIVVFQKLVFIPNMILTEACLHHRKHQLKVESNGQKSTNNDLLGILLESNCILKCQ 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00397 173 PANTHER AMIDASE 1 43 111 - -
Vian8g00397 173 SMART tpr_5 39 72 IPR019734 GO:0005515
Vian8g00397 173 SMART tpr_5 73 106 IPR019734 GO:0005515
Vian8g00397 173 Gene3D Tetratricopeptide repeat domain 41 112 IPR011990 GO:0005515
Vian8g00397 173 Pfam Helicase associated domain (HA2) 2 57 IPR007502 GO:0004386
Vian8g00397 173 Pfam TPR repeat 47 87 - -
Vian8g00397 173 SUPERFAMILY TPR-like 43 105 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00397 Vian-Chr8 6620506 6621840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00397 43 105 U-box Gene Family AT3G07370 39.683 3.96e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00397 - - pvu:PHAVU_002G330000g 118.627