Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00391 ATGCAAGGTTTTCCTATAAATGTGAGTGTGGAACCAGACAACTATCATACAAAGGTTGCAAAATCAGTGTGCAACAAAACTTCTTTCCACTTCTACAAACATTTACTGCTCCTTTTCACGTTGCAAAACGACGCCTTTGCGGTCGATTCGGACAAATCCGTGCTCCTCCGTATGAAGGCGTCGTTGTCCGACCCCGCCGGCGTTCTCTCCACGTGGACCACCGCTGACGGTTCTCACTCCGGTCACTGCTACTGGTCTGGCGTCCTCTGTGATGCGAACTCCCGCGTCGTCGCCGTCAACGTCACCGGAAACGGCGCCAGCCGAGCCTCGCACCCGTGCTCCGATTCCTCTAAACTCCCCCTCTACGGTTTCGGAATTCGGCGAACATGCAAAGGTAGTAAAGGTTCTCTCTTCGGAAACGTTTCTTCTGTTGGTTTCGATTTCATCAGTGAGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCATGGAAAATCTAGAGGTTCTCGATTTAGAAGGGAACTTGATAAGTGGTTATCTTCCCTTGAGAATTCAAGGTTTGAGGAAGTTGAGGGTTCTAAATCTTGGGTTTAATAGGTTTATTGGGGAGGTACCTAGTTCAATTGCGTCTCTTGAGAGTTTGGAGGTTCTGAATTTGGCTGGTAATGAATTGAATGGTTCTGTGCCTGGTTTTGTCGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGAGATTGGGGAGAATTGTTGGAAGCTTGAACATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGGATTCCGGGGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGCTGTATTCCAATTTGTTGGAAGAGAGTATTCCTGGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTTTCCAGGAACACTCTCAGTGGTTCTGTGCCGAGGGAGCTTGGGAATTGCTCAGAGTTGTCGGTTCTTGTGCTGTCAAATCTCTTTGATGTTCGCGGTGATGCTGCCGGTGATTTTGGGAAATTAGGTTCAGTGAATGATGAGGTGAATTATTTTGAAGGGTCAATGCCACTGGAGGTTTTTTCGCTTCCAAACTTGAGGATATTGTGGGCTCCCATGGTGAATCTGGAAGGCAGTTTTCAAGGGAACTGGGGTGGTTGTCAGAGCTTGGAGATGGTAAATTTGGCTCAGAACTTTTTGAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCAAGAGGCTGCATTTTCTTGATTTAAATGGAAACAACCTTACTGGGGTGCTTTCTACAGAACTTCACGTTCCCTGTATGAGTGTTTTTGATGTTAGTGGGAACATGTTGTCTGGCTCAGTTCCTGATTTCTCCAATACCGTTTGTCCCCCTGTTCCTTCTTGGAATGGAAACCTGTTTGAAGATGGGAATGTTTTCTCGCCATATGCCTCGTTTTTTTTGTCAATGGTTCATGAAAGATCTCTTTTTACATCAATGGGGGGAATTGGTACTTCTGTTGTTCACAACTTTGGGCAAAACAGCTTTACTGGCATTCAGTCGCTACCCGTACCTCATGACAGGCTGGGGAAGAAGAATGGCTACACGTTTCTTGTTGGTGGAAACATTCTTACAGGAACATTTCCTACATATTTATTTGAGAAATGTGATAGACTAGACGCATTCCTTTTAAATGCCAGTTATAATAATATATCTGGTCATATACCTTTCAATATCAGTCGAATGTGCAGATCATTGAAATTTTTGGACGTGTCTGGAAATCAACTTGCGGGACCTATTCCTGTTGATTTAGGGAATGTTGTATCCCTTGTATCGCTAAACCTCAGTAGGAATCAATTACAAGGTCAAATTCCCTCCAGCCTTGGCCAGATGAAGAATCTGAAGTTTCTCTCTTTGGCTGGTAATAAGTTAAATGGCTCAATTCCTACCAGCCTGGGGCAGTTGTACTCTTTGGAAGTCTTTGACCTCTCTTCAAACTCTCTTACTGGTGAAATTCCAAAAGCTATTGAGAATATGAGAAATCTGACTGATGTTTTGCTCAATAACAACAATCTTTCTGGTCATATTCCTGATGGTTTGGCACATGTCACTTCACTCTCAGTATTCAATGTGTCTTTCAACAACTTATCTGGATATTTTCCTTCCAACAGTGGCTTGTTTAAATGTAGCAGTGCTGTTGGGAATCCATACCTAAGTCCATGCCGCGGAGTGTCTCTGACTGTGCCATCAGGGAATCAGCCAGGGCCGATTGATAGCAACTCTTATAATTCGGAAACAGAGCAAGCTACTGGCAAGAAGAGTGGGAGTGACTTCAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTGTTTCGGTACTTATAGCCCTGATTGTTCTATTCTTTTACACACGGAAGTGGAAGCCAAGGTCCAGGGTTGTTGGCTCTACAAGGAAAGAAGTTACAGTGTTTACTGATATTGGGGTCCCATTGACATTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGTATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCGGAGATAGCATCAGGAATCCTGGTGGCAGTCAAACGACTCGCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCCGAGATCAAGACTCTTGGGAGGCTTCATCATCCTAACCTTGTCACTCTGATTGGTTATCATGCTTGTGAAACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGAATACTATCGCTCAAAAGTCAAAATAAGTTCAGTGATCAAATGGAGTTCCCTAGTGAAGTTTCTCTTCTTTGTGGTTCTGTTCTTGTCGCCAAGCGACGCAGTATTGGGGGATTCGGACGAATCTTCTCTCCTTCGTCTGAAGGCATCGTTTTCCGACCCCGCCGGCGTTCTCTCCACATGGACCTCCGCAGCCGGCGCTGACTCTGGCTACTGCTCTTGGTCTGGTGTCCTCTGCAACGCGAATTCCCGGGTGGTCGCCGTCAACGTCACCGGAAACGGCGGCAACCGCCGCAACGGAACCTCTCACCCGTGCAAAGGTTTCTCTCAATTCCCTCTTTACGGATTCGGAGTTCGGCGAACGTGCGAAGGTAGTAAAGGTTCTCTCTTTGGAAACGTTTCTTCTTTTAATTTCATCAGTGTGCTCACGGAGCTTAGGGTTTTGTCTCTCCCCTTCAACGCGTTGGAGGGGGAAATTCCCGAAGCAATTTGGGGCTTGGAAAAGCTAGAGGTTCTCGATTTAGAAGGGAATCTAATAAGTGGATATCTTCCGTTTAGAATTAACGGCTTGAGGAAGTTGAGGGTTTTGAATCTTGGGTTTAATAGGATTGTAGGGGAGATTCCTGGTTCAATTTCGTCTCTTGAGAGTTTGGAGGTTTTGAATTTGGCTGGTAATGGATTGAATGGTTCTGTGCCTGGTTTTGTTGGGAGGCTTAGAGGGGTGTATCTTTCGTTTAATCAGTTCAGTGGGGTTGTTCCGCGAGGGATTGGGGAGAATTGTTGGAAGCTTGAGCATTTGGATTTGTCTGGGAATTCGTTGGTTCAAGGTATTCCGGTGAGTTTAGGGAATTGTGAGAGGTTGAGGACGCTTTTGTTGTATTCCAATTTGTTGGAAGAGGGTATTCCTAGTGAGCTTGGGAAGCTCAAGAGCCTTGAGGTGTTGGATGTGTCCAGGAACACTCTTAGTGGTTCTGTGCCTAGAGAGCTTGGGAATTGCTCGGAGTTGTCAGTCCTTGTGCTGTCAAATCTCTTTGATCCACGCGGGGATGTCGCTGGTGATTTTGGGAAATTAGGTTCGGTGAATGATGAGCTGAACTATTTTGAAGGGTCTATGCCTGTGGAGGTTTTGTCGCTTCCAAAGCTGAAGATATTGTGGGCTCCCATGGTGAATTTGGAAGGCAGTTTTCAGGTAAGTTGGGGTCGTTGTCAAAGCTTAGAGATGATTAATTTGGCTCAGAATTTTTTCAGTGGGGAATTTCCGAACCAGCTTGGTGTCTGCGAGAGACTGCATTTTCTTGATTTAAGTGGAAACAACCTTACCGGTGTTCTTTCTAAAGAACTTCGCGTTCCCTGTATGAGCACGTTTGATGTTAGCGGGAACATGTTATCTGGTTCAATTCCCGAGTTCTCTGATATTGTTTGTCCCCCTGAACCTTCTTGGAATGGCAACCTATATGAAGATGGTAATGTTTCTCCACCATATGCATTCTTTTTTTTGTCAAAGGTTTGGGAGAATTCACTTTTCACAGCAATGGGGGGAGTTGGTATTTCGGTCGCTCACAACTTTGGTCGAAACAACTTCAATGGCATTCTGTCATTACCTGTGGCACGGGACAGGCTGGGGAAACAGAGCAGTTACACATTTCTGGTTGGTGAAAATAATCTTACTGAACCATTTCCTACGTATTTATTTGAGAAATGCCATGGGTTAGATGCATTGCTTCTAAATGTCAGTTATAATAAGATATCTGGTCATATTCCTTCCAGTCTCAGTGGGATGTGCAGATCATTGAAATTTTTGGATGCTTCTGGAAATCAGCTTGCAGGACCAATTCCCGTTGATTTAGGGAATATGGTCTCCCTTGCATCGCTGAACCTCAGTAAGAATCAGTTAGAAGGAAGTCAACTAGCGCCTATTGATGGCAGCCCTTATAATCCAGCAACTGAACAAGCCACTGGCAAGGACAGTGGTAATGGCTTGAGTTCTATTGAAATAGCATCTATAACTTCTGCTTCAGCCATTTTTTCCGTTCTTATAGCCCTGATTGTTCTATTTTTTTACACTCGGAAGTGGAAGCCTGGGTCCAGGGTTGTTGGTTCTACTAGAAAAGAAGTTACAGTGTTTACTGATATCGGGGTTCCGTTGACTTTTGAAAGTGTTGTCCAAGCCACAGGAAATTTCAATGCTGGCAACTGCATTGGGAGTGGAGGTTTTGGGGCAACATACAAGGCAGAGGTAGCACCAGGAGTCTTGGTGGCAGTCAAACGACTTGCAGTTGGACGTTTCCAAGGTGTTCAACAGTTCCATGCGGAAACCAAGACCCTTGGGAGGCTTCATCATCCTAATCTTGTCACTCTGATTGGTTATCATGCTTGTGAGACAGAGATGTTTCTCATATACAATTATTTGCCTGGTGGGAATCTTGAAAAGTTCATCCAAGAGAGGTTAGGGGGCCTGCTGCTGGTTCTGCAGAAGAATGCAGATATTTGA 5322 0.4515 MQGFPINVSVEPDNYHTKVAKSVCNKTSFHFYKHLLLLFTLQNDAFAVDSDKSVLLRMKASLSDPAGVLSTWTTADGSHSGHCYWSGVLCDANSRVVAVNVTGNGASRASHPCSDSSKLPLYGFGIRRTCKGSKGSLFGNVSSVGFDFISELTELRVLSLPFNALEGEIPEAIWGMENLEVLDLEGNLISGYLPLRIQGLRKLRVLNLGFNRFIGEVPSSIASLESLEVLNLAGNELNGSVPGFVGRLRGVYLSFNQFSGVVPREIGENCWKLEHLDLSGNSLVQGIPGSLGNCERLRTLLLYSNLLEESIPGELGKLKSLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDVRGDAAGDFGKLGSVNDEVNYFEGSMPLEVFSLPNLRILWAPMVNLEGSFQGNWGGCQSLEMVNLAQNFLSGEFPNQLGVCKRLHFLDLNGNNLTGVLSTELHVPCMSVFDVSGNMLSGSVPDFSNTVCPPVPSWNGNLFEDGNVFSPYASFFLSMVHERSLFTSMGGIGTSVVHNFGQNSFTGIQSLPVPHDRLGKKNGYTFLVGGNILTGTFPTYLFEKCDRLDAFLLNASYNNISGHIPFNISRMCRSLKFLDVSGNQLAGPIPVDLGNVVSLVSLNLSRNQLQGQIPSSLGQMKNLKFLSLAGNKLNGSIPTSLGQLYSLEVFDLSSNSLTGEIPKAIENMRNLTDVLLNNNNLSGHIPDGLAHVTSLSVFNVSFNNLSGYFPSNSGLFKCSSAVGNPYLSPCRGVSLTVPSGNQPGPIDSNSYNSETEQATGKKSGSDFSSIEIASITSASAIVSVLIALIVLFFYTRKWKPRSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEIASGILVAVKRLAVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGEYYRSKVKISSVIKWSSLVKFLFFVVLFLSPSDAVLGDSDESSLLRLKASFSDPAGVLSTWTSAAGADSGYCSWSGVLCNANSRVVAVNVTGNGGNRRNGTSHPCKGFSQFPLYGFGVRRTCEGSKGSLFGNVSSFNFISVLTELRVLSLPFNALEGEIPEAIWGLEKLEVLDLEGNLISGYLPFRINGLRKLRVLNLGFNRIVGEIPGSISSLESLEVLNLAGNGLNGSVPGFVGRLRGVYLSFNQFSGVVPRGIGENCWKLEHLDLSGNSLVQGIPVSLGNCERLRTLLLYSNLLEEGIPSELGKLKSLEVLDVSRNTLSGSVPRELGNCSELSVLVLSNLFDPRGDVAGDFGKLGSVNDELNYFEGSMPVEVLSLPKLKILWAPMVNLEGSFQVSWGRCQSLEMINLAQNFFSGEFPNQLGVCERLHFLDLSGNNLTGVLSKELRVPCMSTFDVSGNMLSGSIPEFSDIVCPPEPSWNGNLYEDGNVSPPYAFFFLSKVWENSLFTAMGGVGISVAHNFGRNNFNGILSLPVARDRLGKQSSYTFLVGENNLTEPFPTYLFEKCHGLDALLLNVSYNKISGHIPSSLSGMCRSLKFLDASGNQLAGPIPVDLGNMVSLASLNLSKNQLEGSQLAPIDGSPYNPATEQATGKDSGNGLSSIEIASITSASAIFSVLIALIVLFFYTRKWKPGSRVVGSTRKEVTVFTDIGVPLTFESVVQATGNFNAGNCIGSGGFGATYKAEVAPGVLVAVKRLAVGRFQGVQQFHAETKTLGRLHHPNLVTLIGYHACETEMFLIYNYLPGGNLEKFIQERLGGLLLVLQKNADI 1773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase 602 673 - -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 47 248 IPR032675 -
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1302 1477 - -
Vian8g00391 1773 Pfam Protein kinase domain 869 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1197 1288 - -
Vian8g00391 1773 SUPERFAMILY L domain-like 1309 1578 - -
Vian8g00391 1773 SUPERFAMILY L domain-like 379 752 - -
Vian8g00391 1773 Pfam Leucine rich repeat N-terminal domain 982 1024 IPR013210 -
Vian8g00391 1773 Pfam Leucine rich repeat N-terminal domain 49 91 IPR013210 -
Vian8g00391 1773 MobiDBLite consensus disorder prediction 1581 1601 - -
Vian8g00391 1773 SUPERFAMILY Protein kinase-like (PK-like) 848 944 IPR011009 -
Vian8g00391 1773 Gene3D Phosphorylase Kinase; domain 1 1636 1746 - -
Vian8g00391 1773 Gene3D Phosphorylase Kinase; domain 1 829 941 - -
Vian8g00391 1773 SMART LRR_sd22_2 1086 1112 - -
Vian8g00391 1773 SMART LRR_sd22_2 176 202 - -
Vian8g00391 1773 SMART LRR_sd22_2 318 344 - -
Vian8g00391 1773 SMART LRR_sd22_2 652 667 - -
Vian8g00391 1773 SMART LRR_sd22_2 1204 1223 - -
Vian8g00391 1773 SMART LRR_sd22_2 676 702 - -
Vian8g00391 1773 SMART LRR_sd22_2 1134 1163 - -
Vian8g00391 1773 SMART LRR_sd22_2 270 289 - -
Vian8g00391 1773 SMART LRR_sd22_2 152 167 - -
Vian8g00391 1773 SMART LRR_sd22_2 1252 1278 - -
Vian8g00391 1773 SMART LRR_typ_2 224 246 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1134 1157 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1252 1276 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 176 199 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1086 1110 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1562 1587 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 318 342 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 272 294 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 700 723 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 200 223 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 628 652 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 152 175 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 676 699 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1158 1180 IPR003591 -
Vian8g00391 1773 SMART LRR_typ_2 1206 1228 IPR003591 -
Vian8g00391 1773 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515
Vian8g00391 1773 Pfam Leucine rich repeat 630 689 IPR001611 GO:0005515
Vian8g00391 1773 Pfam Leucine Rich Repeat 272 294 IPR001611 GO:0005515
Vian8g00391 1773 Pfam Leucine Rich Repeat 1206 1228 IPR001611 GO:0005515
Vian8g00391 1773 ProSitePatterns Protein kinases ATP-binding region signature. 1677 1699 IPR017441 GO:0005524
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 1181 1294 IPR032675 -
Vian8g00391 1773 SUPERFAMILY L domain-like 983 1287 - -
Vian8g00391 1773 FunFam Leucine-rich repeat receptor protein kinase EMS1 674 752 - -
Vian8g00391 1773 ProSiteProfiles Protein kinase domain profile. 1671 1773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00391 1773 SUPERFAMILY Protein kinase-like (PK-like) 1653 1759 IPR011009 -
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 368 543 - -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 981 1180 IPR032675 -
Vian8g00391 1773 MobiDBLite consensus disorder prediction 770 796 - -
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 830 941 - -
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 248 358 - -
Vian8g00391 1773 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 248 944 - -
Vian8g00391 1773 Pfam Protein tyrosine and serine/threonine kinase 1674 1759 IPR001245 GO:0004672|GO:0006468
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 513 760 IPR032675 -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 1462 1589 IPR032675 -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 359 498 IPR032675 -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 249 354 IPR032675 -
Vian8g00391 1773 Gene3D Ribonuclease Inhibitor 1295 1431 IPR032675 -
Vian8g00391 1773 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 1635 1746 - -
Vian8g00391 1773 SUPERFAMILY L domain-like 48 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00391 Vian-Chr8 6501227 6515857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00391 48 965 Receptor kinase-like Gene Family AT3G02130 56.429 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Vian8g00391 PK_Tyr_Ser-Thr 1.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00391 - - vum:124828178 1744.17