Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00364 ATGGCAGAACCATCCACCGCCGCCGCCACCACCACCGCGGTGGACCCTCCGCCGCCAGTTACCAAAAGATGGGCTGACGAAGCGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACTGAAGCATCTTCCGTCAACCTTGATTCATTAAAAATCGAAGACAACGATGAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATCCAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCGACCCGCCGCACCGCGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCACCGCAGGCTCTCTGTGTCTGCCCTACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGGAAGTACACCGGGATTGCGTCGGAATGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCGCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGCTTTACCGTCACCTAGGTCCTTTGGGCTGGATTGTGCGTAGGATTACAGTTGACCAGGATCGGGAGAATGATGTGATCTTTCATGTACTAATAGTGGGATTTACAAAATCTAGCGAGTCAAGATCTTTTGCAACTGTTGGATGTCCATGCTGCACTACAATTGCAGCTTTGGCCCTGCTGGTTGTATCTCTCTTGCGAACTGAGCTTCATGCAAACAGAATTGAAAGTCACTTTGAATTGTTACTGCATTTTATTGAAGAATTACGTAGTGAAACTGCTAAAGCTATCTTTAAAATGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTCAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAGAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGATGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCAATGAAACACACTGCCAGCTATACCCGTGAACCTGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGCTTTGGGCGCAAAGGGGCTGTATTTAACCTGATATGTGATGAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGTGCGAGCAGAAAGTGTTGAAGACTATAGAGGTGCTCTCAAGGAAGCTGGTTTACTGCAATGATGTGAATCTGCACAAGTCGAAGGCTGTCGATAACTGTTGTGTTTCTCCTCAATGTGCCTGGATTCTGGCCAAGGAATTCGATCATAACAATGAATGGTTTGATTATTCTGCAGGAGCACATGCGGATGATGGTTAA 1920 0.4682 MAEPSTAAATTTAVDPPPPVTKRWADEADEETEASSTATATEASSVNLDSLKIEDNDENPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILDPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGAARLKILVFDEADQMLAELYRHLGPLGWIVRRITVDQDRENDVIFHVLIVGFTKSSESRSFATVGCPCCTTIAALALLVVSLLRTELHANRIESHFELLLHFIEELRSETAKAIFKMDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDEKDERLMSKIENHFGTRVAEVCEQKVLKTIEVLSRKLVYCNDVNLHKSKAVDNCCVSPQCAWILAKEFDHNNEWFDYSAGAHADDG 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00364 639 CDD SF2_C_DEAD 407 551 - -
Vian8g00364 639 SMART helicmild6 449 542 IPR001650 -
Vian8g00364 639 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 423 583 IPR001650 -
Vian8g00364 639 Pfam Helicase conserved C-terminal domain 420 542 IPR001650 -
Vian8g00364 639 Gene3D - 313 402 IPR027417 -
Vian8g00364 639 Gene3D - 64 289 IPR027417 -
Vian8g00364 639 SMART ultradead3 106 410 IPR014001 -
Vian8g00364 639 MobiDBLite consensus disorder prediction 1 76 - -
Vian8g00364 639 MobiDBLite consensus disorder prediction 34 50 - -
Vian8g00364 639 Gene3D - 403 593 IPR027417 -
Vian8g00364 639 Pfam DEAD/DEAH box helicase 112 250 IPR011545 GO:0003676|GO:0005524
Vian8g00364 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 560 IPR027417 -
Vian8g00364 639 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 86 115 IPR014014 GO:0003724
Vian8g00364 639 MobiDBLite consensus disorder prediction 51 69 - -
Vian8g00364 639 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 48 562 - -
Vian8g00364 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 270 IPR027417 -
Vian8g00364 639 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 120 394 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00364 Vian-Chr8 6094258 6099926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00364 325 574 Eukaryotic Initiation Factors Gene Family AT1G72730 35.878 2.14e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00364 K18655 - gmx:100784739 377.867