Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00325 ATGGGACGATCACCATGCTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCGGAAGAAGATCAGAAGCTCTTAGCTTACATTGAAGAACATGGTCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGATCATGTTGAAGTGAAACTCCTTGTGCTGTTGTGTGTGTGTGTGTTTATAGGGCTTCAGAGGTGTGGCAAGAGCTGTAGACTGAGATGGACCAATTATCTCAGACCTGATATTAAGAGAGGAAAGTTCAGTCTGCAAGAGGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAACGAGATCAAGAACTACTGGAACACACATCTTAAGAAAAGGTTAACAAAAATGGGAATTGACCCTGTCACACACAAACCCAAAAACGATGCACTTCTCTCCAGTGATGGTCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCCCAGTGGGAAAGTGCTCGACTTGAAGCTGAAGCAAGACTAGTGAGAGAGTCAAAGCTACGTTCGCATTCACTTCAGCAACAAATTGGAAGTTCTTCTACATTTGCATCATCATCTTCTGCATCCACTTCAGCTTCAGTGCTCAACAATAATAAACCAGAAGCACCACCTCCGCCACCGCCGCCGCCGTCGCGGTCCTCCCTTGACGTCCTCAAGGCTTGGAACAACGGAGGTTGGTTGAAGTCCAGTGAAGGGAGTGGCGCCATTGCAAGCACGGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACGTTATCTTTCTCTGAGAATGCACCACAGATTATGAATGCGATTGGAGGAGAAAATAACAACAACAACAATGATAACGCAATGCCTATGATCGAGTTTGTGGGAAGTTCGGGTAATTCTTCTTCTCTTGTGAAAGAAGAGGGTGAGCAGGAATGGAAAGGTTACGATAGTTCTATCAACACTTTCAGTTCTGGTTTGCATGAGTTCACGATGGCCATGGAGGGCACTTGGGTCCACGAGACTCTCAGAACCAATGGCTCACATGATGACATTGTTGAAGAAGGCTTCACCAATCTTCTCCTTAAGACAAACTCGGAAGATCCAAGTTTGTCGTCGGAAGGTGGAGGAGAGTCTAACAATGGTGACGGTAGCGCCGGTCACAGTGATTTTTACGAAGATAACAACAACTATTGGAACAGCATCCTTAATTTAGTGAATTCATCTCCTTCTCATTCTCCTATGTTCTGA 1278 0.4632 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKADHVEVKLLVLLCVCVFIGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKLRSHSLQQQIGSSSTFASSSSASTSASVLNNNKPEAPPPPPPPPSRSSLDVLKAWNNGGWLKSSEGSGAIASTVGVSGDLESPTSTLSFSENAPQIMNAIGGENNNNNNDNAMPMIEFVGSSGNSSSLVKEEGEQEWKGYDSSINTFSSGLHEFTMAMEGTWVHETLRTNGSHDDIVEEGFTNLLLKTNSEDPSLSSEGGGESNNGDGSAGHSDFYEDNNNYWNSILNLVNSSPSHSPMF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00325 425 MobiDBLite consensus disorder prediction 189 217 - -
Vian8g00325 425 SUPERFAMILY Homeodomain-like 11 125 IPR009057 -
Vian8g00325 425 CDD SANT 16 78 IPR001005 -
Vian8g00325 425 SMART sant 13 80 IPR001005 -
Vian8g00325 425 SMART sant 83 131 IPR001005 -
Vian8g00325 425 CDD SANT 86 129 IPR001005 -
Vian8g00325 425 ProSiteProfiles Myb-like domain profile. 9 78 IPR001005 -
Vian8g00325 425 MobiDBLite consensus disorder prediction 218 232 - -
Vian8g00325 425 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 269 - -
Vian8g00325 425 ProSiteProfiles Myb-like domain profile. 79 129 IPR001005 -
Vian8g00325 425 MobiDBLite consensus disorder prediction 136 164 - -
Vian8g00325 425 Gene3D - 13 83 - -
Vian8g00325 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 133 IPR017930 -
Vian8g00325 425 MobiDBLite consensus disorder prediction 374 398 - -
Vian8g00325 425 FunFam MYB transcription factor 86 133 - -
Vian8g00325 425 Gene3D - 86 133 - -
Vian8g00325 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 78 IPR017930 -
Vian8g00325 425 MobiDBLite consensus disorder prediction 149 164 - -
Vian8g00325 425 Pfam Myb-like DNA-binding domain 84 129 IPR001005 -
Vian8g00325 425 Pfam Myb-like DNA-binding domain 14 78 IPR001005 -
Vian8g00325 425 MobiDBLite consensus disorder prediction 189 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00325 Vian-Chr8 5545682 5547802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00325 1 425 MYB Transcription Factor Family AT3G01140 52.914 2.73e-121 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vian8g00325 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00325 K09422 - gmx:100787446 681.019