Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00316 ATGGAGGAGAGGAATGAGATGGAAAAGATTGATGATGTTATGCCAGGATTTCGTTTTCACCCCACTGATGAAGAGCTTGTTGATTTCTATCTCAAGAGAAAAATTCAGCAGAAATCTCTCCCTATTGAACTGATTAAGCAAGTGGATATTTACAAACATGATCCATGGGACCTTCCAAAGCTAGCAGGCACAGGGGAGAAAGAGTGGTACTTCTATTGCCCAAGGGACAGAAAATACAGGAACAGTGCACGTCCAAATAGGGTCACAAGAGCTGGGTTTTGGAAGGCCACTGGAACTGACAGACCTATATATTCCTCTGAAGGGAAGTGCATTGGTTTGAAGAAGTCTCTTGTGTTCTACAGAGGAAGAGCTGCCAAAGGGATGAAAACTGATTGGATGATGCATGAGTTTAGGCTTCCTTGCATCTCTGACTCAGCCCCTTCTAAAAAACTCTCAGACAAAACCCTCCCTCCAAGTGATTCATGGGCAATCTGTAGGATATTCAAGAAAACCAACTCCCTTTCCATGGCACAGAAAGCTTTATCTCACCCTTGGATCTCTCAGTTATCAGGAAGCATGGTATCTGACATGTTCACACAGGGTGCAGAAACAAACCATCACCTAGGATCACCAGCCATTCAATTTTGTTATGAAAAGCAAGAGTTAAACCAAGTCTCCAATAGTGACATCAACACCAACTTCACAGATTCAGATATTGCCAGTTACAAACCCATCAACAGCAGCACAGTTCCCAAGCCTTCACCACAAATTCCTGTTTCAGATGACTTCATATTCTACACAGAACACACCAAGTGCACACTTGATGCCAGTTCCATGCTTTCTCCCAACCCTGACTACATAACATTTGAAGAGCCAAACCAACAACAGTATAGTGGCTTCTCAACCAATCTACCTCACTTCATCCAACAAAACATGAGCACAGAAACAGTAACAAAAGAACAACAAGATTGGGAAACAATTGGGAGAGCCACTGGATTTCCCTTTACTTTGCTTCCCCCATATGATGCATGGAAGTCTTCTGTGGCATGGGATTCATCTTCTTGCCCCAGTGACATGTCCACTACCTATTCCACCAGTAAATGCTACACTTGA 1113 0.4322 MEERNEMEKIDDVMPGFRFHPTDEELVDFYLKRKIQQKSLPIELIKQVDIYKHDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRLPCISDSAPSKKLSDKTLPPSDSWAICRIFKKTNSLSMAQKALSHPWISQLSGSMVSDMFTQGAETNHHLGSPAIQFCYEKQELNQVSNSDINTNFTDSDIASYKPINSSTVPKPSPQIPVSDDFIFYTEHTKCTLDASSMLSPNPDYITFEEPNQQQYSGFSTNLPHFIQQNMSTETVTKEQQDWETIGRATGFPFTLLPPYDAWKSSVAWDSSSCPSDMSTTYSTSKCYT 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00316 370 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Vian8g00316 370 SUPERFAMILY NAC domain 11 170 IPR036093 GO:0003677|GO:0006355
Vian8g00316 370 Gene3D NAC domain 22 175 IPR036093 GO:0003677|GO:0006355
Vian8g00316 370 FunFam NAC domain-containing protein 35 22 173 - -
Vian8g00316 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 268 - -
Vian8g00316 370 ProSiteProfiles NAC domain profile. 13 170 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00316 Vian-Chr8 5272004 5273992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00316 2 186 NAC Transcription Factor Family AT5G39820 68.500 1.09e-96 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian8g00316 NAM 2.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00316 - - gmx:100777630 612.068