Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00303 ATGGAGATAATAACACCAACGCCACCACCAACAGCCGTCACTACCACAAACGCCGCCCCCAAATCGCCGGAACTCGACATAGAGACTCCCACCCGGATCCATCAAGCCGCCGGAAACCCGAATCCCAGTCCAAAGCCGGTGTCTTTCTCCAACGGGGTCTTGAAGCGCCACCATGCAAACAACCGCACCGCCGCCCCGGTGGTTTACAAGGAATGCTTGAAGAACCACGTCGCCAGCTTAGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCGTCGCCCGCGGCAACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCTTGCGGCTGCCACCGTAACTTCCACCGCCGCGAGCCAGAGGAGCCACCAATTTCTCCGGCGACGCATCATGTTCTGGAGTACCAGCCCCACCACCGTCACCACCCTCCTCCGCCACCGCCGCACCGGAGTCCGAATTCCTCCTCTCCGCCGCCGATCTCTTCCTACCCCTCCGCACCCCACATGCTCCTCGCCCTCTCCAGCGGCGGCGGCCTCTCCGTGGCCCCGGAGAACACCGCCGCGCCGGCTCTGGCGCACCACTCCCGGAAGCGCTTCCGCACGAAATTCACCCAGGAGCAGAAGGAGAAGATGCACGAGTTCGCCGACAAAGTGGGGTGGAAGATGCAGAAGCGCGACGAAAACATGGTCATGGAGTTTTGTAGCGAGGTTGGTGTCGACAGAGGAGTCCTCAAAGTGTGGATGCACAACAACAAAAACACTTTTGCCAAAAAGGACAACCTCAATGGTAGCCCTGCTAACGGGACTAACCATGTCGCCTCTCCAAACAAAGCTACCGTCAGAAGCAACGTTAACGGCCTCGAACAGGAACACGGCGGCGGAATCAACGGTAACAGCGACCACGACCACAACCACAACCACAACCTCGGTTCTTCTCATGATGTGAACGAGTACGATAATGACAGTGGAACAAATGGTGGTGGAACAAACGGGTCTTCTTCTTCTTAA 1011 0.5915 MEIITPTPPPTAVTTTNAAPKSPELDIETPTRIHQAAGNPNPSPKPVSFSNGVLKRHHANNRTAAPVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEEPPISPATHHVLEYQPHHRHHPPPPPPHRSPNSSSPPPISSYPSAPHMLLALSSGGGLSVAPENTAAPALAHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQKRDENMVMEFCSEVGVDRGVLKVWMHNNKNTFAKKDNLNGSPANGTNHVASPNKATVRSNVNGLEQEHGGGINGNSDHDHNHNHNLGSSHDVNEYDNDSGTNGGGTNGSSSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00303 336 Gene3D - 183 258 - -
Vian8g00303 336 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 255 - -
Vian8g00303 336 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Vian8g00303 336 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Vian8g00303 336 SUPERFAMILY Homeodomain-like 187 258 IPR009057 -
Vian8g00303 336 FunFam Zinc-finger homeodomain protein 2 185 258 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 256 336 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 256 287 - -
Vian8g00303 336 NCBIfam homeobox domain, ZF-HD class 197 254 IPR006455 -
Vian8g00303 336 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
Vian8g00303 336 MobiDBLite consensus disorder prediction 296 315 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 8 22 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 316 336 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 148 165 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 1 25 - -
Vian8g00303 336 MobiDBLite consensus disorder prediction 137 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00303 Vian-Chr8 5039462 5040472 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00303 13 301 ZF-HD Transcription Factor Family AT3G28920 51.974 1.77e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian8g00303 ZF-HD_dimer 7.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00303 - - gmx:100814730 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g00303 8 5039462 5040472 Vian2g00392 2 4436023 4436994 PCT