Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00301 ATGAGGAAGCGGCAGGTGGTTGTGAGAAGAGAGGAGCCTCAGAGAAGTGTTAGGAGTGTGAAGTATGGTGAGTGCCAGAAGAATCATGCAGCAAATGTTGGAGGGTATGCTGTTGATGGTTGCAGAGAGTTCATGGCAAGTGGTGGAGAAGGGACAACTGCTGCTCTCACTTGTGCTGCATGTGGCTGCCACAGGAACTTCCACAAGAGACAGGTGGAAACTGAAGTTGTGTATGCAAATTTCACACTATACCAAACCCCACTTTGCTTTGCCCTTTCTTAG 282 0.4858 MRKRQVVVRREEPQRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGGEGTTAALTCAACGCHRNFHKRQVETEVVYANFTLYQTPLCFALS 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00301 93 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Vian8g00301 93 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 21 71 IPR006456 -
Vian8g00301 93 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 16 75 - -
Vian8g00301 93 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00301 Vian-Chr8 4989427 4990285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00301 1 77 Zinc finger-homeobox gene family AT3G28917 69.663 7.69e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian8g00301 ZF-HD_dimer 6.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00301 - - aprc:113868039 131.724