Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00296 ATGGCTGATGCTGCTGAGCCTAAAGCATTGCCAGAGGCAGAGAAGAAGAAGGAGCAGACTTTGCCTTTTTACAAGCTCTTCTCATTTGCTGACAAGTGTGATTGGATGCTCATGGTCTCTGGCAGCTTAGGAGCCATTGTTCATGGTTCATCAATGCCAGTTTTCTTCCTGCTCTTTGGTGAAATGGTTAATGGCTTTGGCAAAAACCAAATGGACTTGAAGAAAATGACAGAAGAAGTATCAAAGTATGCTCTCTATTTCGTGTACCTTGGCCTTGTCGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGACAAGTGAGCACACTGAGAAAGAAGTACTTGGAAGCAGTGCTTAAACAGGACGTTGGTTTCTTTGACACGGATGCAAGAACAGGAGATATTGTTTTCAGTGTCTCCACAGATACACTACTAGTTCAAGATGCTATAAGCGAGAAGGGGCAGTTGATTCATATCCATTGTCACATAGCAGATGTTGCAATTCCTTTATGGTACAAAAAAAGAACGTATAGAAACCATGGCCTTCCGGGGTTGTTGATTGATATCCACCGAAGTGGGTCCATAGATGATGATGGAACAAGGTGGCGCATGTTAGATGCTAACATGCACGGGTTCAGTCACATGGTGGGGAATTTCATACACTATCTATCAACGTTTCTGGCGGGTCTGGTGGTTGGTTTTGTGTCAGCATGGAGGCTCGCACTTCTGAGTGTTGCAGTGATTCCCGGGATTGCTTTTGCTGGTGGATTGTATGCTTACACACTCACTGGCCTCACATCAAAGAGTCGAGAATCTTATGCAAATGCAGGAATAATAGCTGAGCAGGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTTGGGGAGAGCAAGGCACTGAATTCTTATTCTGATGCAATACAAAACACTCTGAAACTTGGATACAAGGCAGGAATGGCCAAAGGTTTAGGCCTAGGATGCACATATGGAATAGCATGCATGTCTTGGGCACTGGTTTTCTGGTATGCTGGAGTTTTCATCAGGAATGGACAAACAGATGGAGGCAAGGCATTCACAGCTATTTTCTCAGCCATTGTTGGTGGCATGAGTTTGGGACAGTCCTTTTCCAATTTGGGTGCTTTCAGCAAAGGCAAAGCAGCGGGATACAAATTGATGGAGATCATCAAACAGAAACCCACCATAGTGGAAGATCCATCAGAAGGAAAGTGCCTAGCTGAGGTTAATGGCAACATTGAATTTAAAGATGTTTCTTTCAGCTACCCTTCGAGGCCGGATGTGTTTATCTTTCGCAGTCAGGTTCTGCTGGATAATGTGGACATTAAGACTCTACAACTAAAATGGTTGCGTGATCAAATTGGGTTGGTGAATCAAGAGCCTGCACTCTTTGCAACTACAATTCTAGAGAACATACTCTATGGAAAAGCTGATGCAACTATGGCTGAAGTGGAAGCTGCTACTTCTGCTGCAAATGCTCATAGTTTTATCACCTTGCTTCCTAATGGTTATAACACTCAGGTGGGAGAGCGAGGAGTTCAATTATCTGGGGGCCAAAAGCAGAGAATTGCAATTGCCAGAGCCATGTTGAAGAACCCAAAGATCCTTCTATTAGATGAAGCAACTAGTGCTCTTGATGCAGGGTCTGAGAGCATAGTTCAAGAGGCACTAGACAGGCTCATGGTTGGAAGAACAACTGTGGTTGTGGCACATCGTCTATCAACCATAAGGAATGTTGATACCATTGCAGTTATACAACAAGGACAAGTTGTTGAGACAGGCACACATGAAGAACTCATTGCCAAGGCAGGCACATATGCTTCACTCATTCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCCAACCCATCAACTCGCCGGACTAGGTCGTCGCGGCTGAGCCATTCACTGTCAACAAAGTCCTTGAGTCTCAGGTCTGGCAGCCTGAGGAACTTGAGCTACCAGTACAGCACTGGTGCAGATGGCCGTATTGAGATGATATCAAATGCTGAAACAGATAAGAAAAATCCTGCTCCAGATGGATATTTCTTCAGGTTGCTTAAGTTGAATGCTCCCGAGTGGCCTTACTCAATCATGGGAGCTGTTGGTTCTGTTCTTTCTGGATTCATTGGCCCTACTTTTGCTATTGTTATGAGCAACATGATTGAGGTCTTTTACTTCAGAAATTATGCTTCCATGGAGAGGAAGACTAAGGAGTATGTCTTCATTTACATTGGTGCCGGTCTCTATGCAGTTGGTGCATACTTGATACAGCATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTCAGAAGAATGATGCTTGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCAGCTCGCCTTGCCACTGATGCAGCTGATGTGAAGTCTGCAATTGCTGAGAGGATATCAGTGATTCTGCAGAACATGACATCTCTCCTTACTTCTTTTATAGTTGCTTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCTTGGCAACCTTCCCTCTCCTTGTGCTAGCCAACTTTGCTCAGATAGGGCCCAAGTTCCCAAATTCAACCATGACAGAGATTATAATGCATGTGGATGATAGAGGGCTTAATGGTGCAACAGCAGCACTGCATTTTTCTGAGTTGGGGGGGTGGGGTCCTCTACGTATTCAAGTTAGATTCTTGAATGGTACGTGTACAGAAGCTTGTATCAGCTTTTGCTGTGAGGTAGTAGTGACTAATGAGTCTTACATTTTTGACCATATGCAATTATCTCTAAAAGGGTTTGCTGGAGACACAGCCAAAGCTCATGCAAAGACGAGTATGATAGCAGGAGAGGGAGTGAGCAACATCAGAACAGTTGCAGCATTCAATGCTCAAACCAAGATGTTATCAGTGTTCTGCAACGAGCTTCGCGTGCCTCAGCGCCAGAGTCTGCGGCGGAGCCTCACGTCGGGCTTCTTGTTCGGTCTCTCTCAGCTTGCCCTCTATGCCTCCGAGGCTCTCATTCTATGGTACGGGGCACATTTGGTGAGCAAGGGTGCTTCAACCTTCTCAAAGGTGATCAAAGTGTTTGTGGTCCTCGTGATAACGGCGAATTCAGTGGCGGAAACCGTGAGCCTGGCGCCGGAGATAATCCGCGGGGGCGAGGCGGTGGGGTCGGTGTTCTCGATCCTTGATCGGTCGACGAGGATCGACCCTGATGATCCCGACGCAGAGCCGGTGGAATCTCTGCGCGGGGAGATCGAGCTGAGGCATGTTGATTTTGCTTACCCTTCGAGGCCTGATGTGATGGTGTTCAAGGATTTGAGCCTGAGGATCCGTGCAGGGCAGAGCCAGGCTCTTGTGGGGGCAAGTGGGTCAGGGAAGAGTTCTGTGATTGCATTGATAGAGAGATTCTACGACCCTATTGCCGGGAAAGTGATGGTGGATGGGAAGGACATAAGGAAGTTGAATCTGAAGTCTCTGAGGCTGAAGATAGGGTTGGTGCAGCAAGAACCAGCACTTTTTGCAGCGAGCATTTTCGAGAACATTGCATATGGAAAAGATGGTGCAAGTGAGAGTGAGGTGATAGAGGCTGCACGTGCAGCGAACGTGCATGGGTTCGTGAGTGGTTTGCCCGAGGGTTATAAGACACCTGTTGGTGAGAGAGGGGTGCAACTTTCTGGAGGGCAGAAGCAAAGGATCGCCATTGCTAGGGCAGTGCTTAAGGACCCTACGATTCTTCTTCTGGACGAGGCCACCAGTGCCCTAGATGCTGAGTCCGAGTGTGTGCTACAAGAGGCCTTGGAGAGGCTAATGAGGGGTCGCACCACGGTGCTTGTGGCTCACCGTTTGTCGACCATCAGAGGGGTCGATTGCATCGGAGTGGTTCAAGATGGTCGCATTGTGGAGCAAGGTAGCCATGCAGAACTTGTGAGCAGGCCAGAAGGGGCATATTCTAGACTCTTGCAGCTACAACATCATCACATTTGA 4047 0.4702 MADAAEPKALPEAEKKKEQTLPFYKLFSFADKCDWMLMVSGSLGAIVHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTEEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKGQLIHIHCHIADVAIPLWYKKRTYRNHGLPGLLIDIHRSGSIDDDGTRWRMLDANMHGFSHMVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSEGKCLAEVNGNIEFKDVSFSYPSRPDVFIFRSQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKADATMAEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDTIAVIQQGQVVETGTHEELIAKAGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFFRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYFRNYASMERKTKEYVFIYIGAGLYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQIGPKFPNSTMTEIIMHVDDRGLNGATAALHFSELGGWGPLRIQVRFLNGTCTEACISFCCEVVVTNESYIFDHMQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQTKMLSVFCNELRVPQRQSLRRSLTSGFLFGLSQLALYASEALILWYGAHLVSKGASTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAEPVESLRGEIELRHVDFAYPSRPDVMVFKDLSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKDGASESEVIEAARAANVHGFVSGLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQDGRIVEQGSHAELVSRPEGAYSRLLQLQHHHI 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00296 1348 ProSitePatterns ABC transporters family signature. 526 540 IPR017871 GO:0005524|GO:0016887
Vian8g00296 1348 SMART AAA_5 471 600 IPR003593 GO:0016887
Vian8g00296 1348 SMART AAA_5 1133 1319 IPR003593 GO:0016887
Vian8g00296 1348 Pfam ABC transporter transmembrane region 710 870 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 Pfam ABC transporter transmembrane region 217 374 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 Pfam ABC transporter transmembrane region 43 159 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 Pfam ABC transporter transmembrane region 951 1055 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 CDD ABC_6TM_Pgp_ABCB1_D2_like 699 1089 - -
Vian8g00296 1348 CDD ABC_MTABC3_MDL1_MDL2 1106 1344 - -
Vian8g00296 1348 CDD ABC_MTABC3_MDL1_MDL2 424 624 - -
Vian8g00296 1348 PANTHER ABC TRANSPORTER B FAMILY 682 1343 IPR039421 -
Vian8g00296 1348 Pfam ABC transporter 1125 1273 IPR003439 GO:0005524
Vian8g00296 1348 Gene3D ABC transporter type 1, transmembrane domain 649 873 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 389 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1108 1342 IPR003439 GO:0005524
Vian8g00296 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1095 1344 IPR027417 -
Vian8g00296 1348 ProSitePatterns ABC transporters family signature. 1245 1259 IPR017871 GO:0005524|GO:0016887
Vian8g00296 1348 FunFam ABC transporter B family member 19 1073 1095 - -
Vian8g00296 1348 Gene3D - 414 443 IPR027417 -
Vian8g00296 1348 Gene3D - 1096 1345 IPR027417 -
Vian8g00296 1348 SUPERFAMILY ABC transporter transmembrane region 697 1257 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 Gene3D ABC transporter type 1, transmembrane domain 11 170 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 SUPERFAMILY ABC transporter transmembrane region 26 158 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 353 623 IPR003439 GO:0005524
Vian8g00296 1348 Pfam ABC transporter 445 554 IPR003439 GO:0005524
Vian8g00296 1348 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 710 1071 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vian8g00296 1348 SUPERFAMILY ABC transporter transmembrane region 217 409 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 Gene3D ABC transporter type 1, transmembrane domain 216 413 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 Gene3D ABC transporter type 1, transmembrane domain 947 1095 IPR036640 GO:0005524|GO:0016020
Vian8g00296 1348 Gene3D - 445 648 IPR027417 -
Vian8g00296 1348 FunFam ABC transporter B family member 19 1096 1345 - -
Vian8g00296 1348 FunFam ABC transporter B family member 28 441 626 - -
Vian8g00296 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 624 IPR027417 -
Vian8g00296 1348 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00296 Vian-Chr8 4838091 4848099 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00296 711 867 Calmodulin-binding Proteins AT2G36910 29.630 4.62e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00296 K05658 - csin:114307742 1632.46