Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00290 ATGAAAAACAAAGATGTTGCTCAAGGTGCCATTGAAGAAAGATCAAGGTTTTGGAAGAAATTGAAGACTTTTCTAGGTTGCATGCTTCTCAGCTCAAAAGAGGAAGCAACCTCCAACAAAAGCAAAGATGGTGAAGGAAAAAATGTCAGAAGAGACCTTGTTCGGCACAAAAGGGAAAATCCCTCATCCACCAACGAAGGGCAGGAGTTTATTGCAACTTGTTCCAATCTTCGGAGGTTCACTTTTCACGATATTCAGATTGCAACACAGAATTTTGGTTGCAGGAATTTTCTTGGTAGGGGAGGTTTTGGAACTGTGTTCAAAGGTTGGGTTGATGAAAGAGGGAATTCTGCAGCAACACCTGGAACTAGGGTTCCAGTAGCAGTGAAGACTCTTAACCCAAATGGATTTCAAGGAGGAACTGTGCGACTGCCATGGCGTATCAGGATTAAAATTGCAATGGATACTGCCAATGGTTTGACATTTTTGCACGAGGAAGCTGCACGGGCAATTAAGAATGTTTTTGACACAGGGCATCTTACATCGAAGAGTGACGTTTATAGCTTTGGGATGGTTCTCCTCGAAATGCTGACAGGAAGAAGAGCTGTGGATCAAATGAGGCCTGCAAAAGAGAAACACTTGGTGGATTGGTTGCGTCCTCGCATAAGGAGAAAAGAGAATTTTCATTACGTGATGGATCCTAGATTTGAAGGGCAGTATCCAATCAAAGATGCATATAGGGCAATGAGGTTGGCCGTTCAGTGTCTTCGGCATGATCCAAGTGGAAGACCACTGATGAGTGAAGTGGTTGGTGAGTTGAAGCATTTGCTGGCTCGTGATGATGATGGCATGCATTCTGCTCCCTCAATTTCACCTTCACCTTCTCCTTCACCTTCAATCCCCTCATCCTCACTTGGCAGAATCCATGTCGGTCCCTCCAACCATGCCGCCGGTGCTAACAAGTATGGCCTTAGAACTGCTTCAGAACCGAACGTCCCACGGCGTTTTCAGGCCTCACCACTCGGCCAAGACAGCCCTCTCTTTCCACCTCCATCGTAG 1059 0.4589 MKNKDVAQGAIEERSRFWKKLKTFLGCMLLSSKEEATSNKSKDGEGKNVRRDLVRHKRENPSSTNEGQEFIATCSNLRRFTFHDIQIATQNFGCRNFLGRGGFGTVFKGWVDERGNSAATPGTRVPVAVKTLNPNGFQGGTVRLPWRIRIKIAMDTANGLTFLHEEAARAIKNVFDTGHLTSKSDVYSFGMVLLEMLTGRRAVDQMRPAKEKHLVDWLRPRIRRKENFHYVMDPRFEGQYPIKDAYRAMRLAVQCLRHDPSGRPLMSEVVGELKHLLARDDDGMHSAPSISPSPSPSPSIPSSSLGRIHVGPSNHAAGANKYGLRTASEPNVPRRFQASPLGQDSPLFPPPS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00290 352 MobiDBLite consensus disorder prediction 35 67 - -
Vian8g00290 352 Gene3D Phosphorylase Kinase; domain 1 62 157 - -
Vian8g00290 352 PANTHER OS01G0588500 PROTEIN-RELATED 56 139 - -
Vian8g00290 352 SUPERFAMILY Protein kinase-like (PK-like) 76 292 IPR011009 -
Vian8g00290 352 SMART tyrkin_6 92 273 IPR020635 GO:0004713|GO:0006468
Vian8g00290 352 ProSitePatterns Protein kinases ATP-binding region signature. 98 130 IPR017441 GO:0005524
Vian8g00290 352 MobiDBLite consensus disorder prediction 36 63 - -
Vian8g00290 352 Gene3D Transferase(Phosphotransferase) domain 1 170 287 - -
Vian8g00290 352 Pfam Protein tyrosine and serine/threonine kinase 175 272 IPR001245 GO:0004672|GO:0006468
Vian8g00290 352 ProSiteProfiles Protein kinase domain profile. 1 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian8g00290 352 MobiDBLite consensus disorder prediction 282 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00290 Vian-Chr8 4684015 4687246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00290 25 297 Glycoside Hydrolase AT3G07070 28.075 6.47e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vian8g00290 PK_Tyr_Ser-Thr 4.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00290 - - vum:124826044 614.379