Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian8g00277 ATGTCCGACGGCCATCTCTTCAACAACATCACCCTCGGAGGCCGCGGAGGCACGAATTCTGGGCAGATAAGGATTTATGCTGGAGGAATTATATGGAAGAGACAGGGCGGCGGTAAATTAATTGAAGTTGATAAATCTGACATAATGGGGGTGACATGGATGAAGGTTCCAAGGACTAACCAACTTGGGGTTCAAATCAAAGATGGGTTGTACTACAAGTTCACAGGATTTCGCGACCAGGATGTTGTAAGTTTGACCAATTTTTTTCAAAACACCTGTGGAATATCAGTAGAGGAGAAACAACTTTCTGTTAGCGGACGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTTATGGTTGGTTCAAAGCAAGCTTTTGAAGTTTCTTTAGCAGACGTCTCTCAAACACAGCTTCAAGGGAAGAATGACGTGATCTTGGAGTTTCACGTGGATGACACAACTGGAGCTAATGAGAAAGATTCATTGATGGAGATAAGTTTCCATATACCGAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCTCCTGCTCAGGTTTTCCGTGACAAAATAATGTCTATGGCTGATGTTGGTGCTGGAGGTGAAGATGCTGTTGTTACCTTTGAGGGTATTGCAATCCTTACACCAAGGGGACGATACAGTGTTGAGTTACACATGTCATTCTTGCGGCTTCAGGGACAAGCTAATGATTTCAAAATTCAGTATAGCAGTGTGGTTCGCCTATTTTTGCTTCCTAAGTCTAATCAACCACATACCTTCGTTATCATTAGCCTTGACCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTGATGCAGTTTGAAACTGATTATGTTGTTCAAAGTGAATTGGCAATAACTGAAGATCTTTATAACACAAAGTATAAGGATAAATTGGAGCTGTCTTATAAGGGACTTATTCATGAAGTGTTCACCACAATATTACGTGGGTTGTCAGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGGAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTACCCTCTTGAGAAGAGCTTCTTCTTTCTGCCTAAACCTCCCACTCTAATTCTTCATGAAGAGATTGACTATGTGGAGTTTGAGAGGCATGCTGCTGGTGGCTCCAATATGCATTATTTCGACCTTCTTATCAGACTGAAATCTGAACAAGAGCATCTATTCCGTAATATTCAGAGAAATGAGTACCACAATCTGTACGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAATTTGGGAGATGCCCAACCCACGGTTGGTATTAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTTGAGCGTATTAAAAATGAAGCTGGTGGAGATGAAAGTGACGAGGAGGATTCCGATTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACTGATGATTCTGGGGCAGATGATTCCGATGGTAGTGATAGTGGTGATGAGAAAGAGGCAAGCTCGGCTGACACCTTAATAGTGATCAATTTTCAGAAGCCTGTCAAAAAGGAATCAAAGAAGGACCTGCCTTCTAAGGCGACTACTTCAAAAAAGAAATCTAAAGATGATGAGGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAGGACCCAAATGCACCCAAGAGGGCAATGTCCGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTAAAGAAAACTAATCCTGGAATTTCATTTACGGACGTGGGAAGAGTACTTGGAGAGAAATGGAAAAAGATGTCAGCGGATGAGAAGGAACCATACGAGGCAAAAGCACGCGAAGATAAAAAACGTTACAAGGATGAGATCAGTGGCTACAAGAATCCCCAACCTATGAATATTGATTCTGGAAATGACTCTGACAGTTCTTAA 1962 0.4108 MSDGHLFNNITLGGRGGTNSGQIRIYAGGIIWKRQGGGKLIEVDKSDIMGVTWMKVPRTNQLGVQIKDGLYYKFTGFRDQDVVSLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGIAILTPRGRYSVELHMSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAITEDLYNTKYKDKLELSYKGLIHEVFTTILRGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDEGSPTDDSGADDSDGSDSGDEKEASSADTLIVINFQKPVKKESKKDLPSKATTSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDVGRVLGEKWKKMSADEKEPYEAKAREDKKRYKDEISGYKNPQPMNIDSGNDSDSS 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian8g00277 653 FunFam FACT complex subunit SSRP1 552 646 - -
Vian8g00277 653 FunFam FACT complex subunit SSRP1 1 93 - -
Vian8g00277 653 FunFam Fact complex subunit ssrp1 199 338 - -
Vian8g00277 653 Pfam POB3-like N-terminal PH domain 7 99 IPR035417 -
Vian8g00277 653 Pfam HMG (high mobility group) box 569 637 IPR009071 -
Vian8g00277 653 CDD HMG-box_AtSSRP1 566 640 - -
Vian8g00277 653 Pfam Structure-specific recognition protein (SSRP1) 106 174 IPR024954 -
Vian8g00277 653 SMART hmgende2 568 638 IPR009071 -
Vian8g00277 653 SUPERFAMILY PH domain-like 206 440 - -
Vian8g00277 653 PANTHER FACT COMPLEX SUBUNIT SSRP1 1 622 - -
Vian8g00277 653 SUPERFAMILY HMG-box 556 638 IPR036910 -
Vian8g00277 653 Gene3D - 199 338 - -
Vian8g00277 653 FunFam FACT complex subunit SSRP1 96 179 - -
Vian8g00277 653 FunFam FACT complex subunit SSRP1 339 447 - -
Vian8g00277 653 MobiDBLite consensus disorder prediction 609 653 - -
Vian8g00277 653 MobiDBLite consensus disorder prediction 495 509 - -
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Vian8g00277 653 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 569 637 IPR009071 -
Vian8g00277 653 MobiDBLite consensus disorder prediction 639 653 - -
Vian8g00277 653 MobiDBLite consensus disorder prediction 609 634 - -
Vian8g00277 653 Gene3D - 339 447 IPR011993 -
Vian8g00277 653 MobiDBLite consensus disorder prediction 468 577 - -
Vian8g00277 653 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Vian8g00277 653 Gene3D - 95 179 IPR038167 -
Vian8g00277 653 Gene3D - 1 92 IPR011993 -
Vian8g00277 653 Gene3D High mobility group box domain 552 647 IPR036910 -
Vian8g00277 653 CDD PH2_SSRP1-like 342 441 - -
Vian8g00277 653 SMART Rtt106_2 348 441 IPR013719 -
Vian8g00277 653 MobiDBLite consensus disorder prediction 529 560 - -
Vian8g00277 653 CDD PH1_SSRP1-like 207 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian8g00277 Vian-Chr8 4489568 4494943 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian8g00277 565 637 ARID Transcription Factor Family AT1G04880 42.466 9.57e-11 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vian8g00277 POB3_N 4.3e-22 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian8g00277 K09272 - gmx:100805034 1165.21